RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 REC8O95072 547 aa10.12□□□□□ -0.79
TRIM48-201ENST00000417545 HLA-DOAP06340 250 aa10.12□□□□□ -0.79
TRIM48-201ENST00000417545 PPP4CP60510 307 aa10.12□□□□□ -0.79
TRIM48-201ENST00000417545 TCP10Q12799 353 aa10.12□□□□□ -0.79
TRIM48-201ENST00000417545 SPDYE2Q495Y8 402 aa10.12□□□□□ -0.79
TRIM48-201ENST00000417545 APOBEC3HQ6NTF7 200 aaKnown RBP10.12□□□□□ -0.79
TRIM48-201ENST00000417545 MAPKAPK5Q8IW41 473 aa10.12□□□□□ -0.79
TRIM48-201ENST00000417545 UPF2Q9HAU5 1272 aaKnown RBP10.12□□□□□ -0.79
TRIM48-201ENST00000417545 SGSM2O43147 1006 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 EGFRP00533 1210 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 POLR3DP05423 398 aaPredicted RBP10.11□□□□□ -0.79
TRIM48-201ENST00000417545 ATXN8OSP0DMR3 200 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 PRKAR2AP13861 404 aaKnown RBP10.11□□□□□ -0.79
TRIM48-201ENST00000417545 MCCP23508 829 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 NF2P35240 595 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 LDHDQ86WU2 507 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 SDR42E1Q8WUS8 393 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 RIOK1Q9BRS2 568 aaKnown RBP10.11□□□□□ -0.79
TRIM48-201ENST00000417545 ATP8A2Q9NTI2 1148 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 MCM9Q9NXL9 1143 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 BAZ2AQ9UIF9 1905 aaKnown RBP10.11□□□□□ -0.79
TRIM48-201ENST00000417545 LAMB1P07942 1786 aa10.11□□□□□ -0.79
TRIM48-201ENST00000417545 ENTPD3O75355 529 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 SLC4A8Q2Y0W8 1093 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 LHX8Q68G74 356 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 ZNF589Q86UQ0 364 aaPredicted RBP10.1□□□□□ -0.79
TRIM48-201ENST00000417545 CRACR2BQ8N4Y2 399 aaPredicted RBP10.1□□□□□ -0.79
TRIM48-201ENST00000417545 ZC3H15Q8WU90 426 aaKnown RBP10.1□□□□□ -0.79
TRIM48-201ENST00000417545 HOOK2Q96ED9 719 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 STRBPQ96SI9 672 aaKnown RBP10.1□□□□□ -0.79
TRIM48-201ENST00000417545 SAP30BPQ9UHR5 308 aaKnown RBP10.1□□□□□ -0.79
TRIM48-201ENST00000417545 CTNNA3Q9UI47 895 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 FLT1P17948 1338 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 PITPNM2Q9BZ72 1349 aa10.1□□□□□ -0.79
TRIM48-201ENST00000417545 RPAP1Q9BWH6 1393 aaPredicted RBP10.1□□□□□ -0.79
TRIM48-201ENST00000417545 MINDY4BA8MYZ0 360 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 PATL2C9JE40 543 aaKnown RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 PRKAB2O43741 272 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 SLC3A2P08195 630 aaKnown RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 RHBDL3P58872 404 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 KRT26Q7Z3Y9 468 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 TTC6Q86TZ1 520 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 ZBED3Q96IU2 234 aaPredicted RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 IDI2Q9BXS1 227 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 OSBPL5Q9H0X9 879 aaPredicted RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 ARPP21Q9UBL0 812 aaPredicted RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 PPP2R3BQ9Y5P8 575 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 MYH8P13535 1937 aa10.09□□□□□ -0.79
TRIM48-201ENST00000417545 ASTN2O75129 1339 aaPredicted RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 POLR2AP24928 1970 aaKnown RBP10.09□□□□□ -0.79
TRIM48-201ENST00000417545 POTECB2RU33 542 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 HSPD1P10809 573 aaKnown RBP10.08□□□□□ -0.8
TRIM48-201ENST00000417545 HIRAP54198 1017 aaPredicted RBP10.08□□□□□ -0.8
TRIM48-201ENST00000417545 NFIAQ12857 509 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 TTLL12Q14166 644 aaPredicted RBP10.08□□□□□ -0.8
TRIM48-201ENST00000417545 RASA3Q14644 834 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 IMMTQ16891 758 aaKnown RBP10.08□□□□□ -0.8
TRIM48-201ENST00000417545 RNF20Q5VTR2 975 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 FKBP1CQ5VVH2 108 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 GIMAP6Q6P9H5 292 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 CDC37L1Q7L3B6 337 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 FAM83AQ86UY5 434 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 IFNL3Q8IZI9 196 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 FAM151AQ8WW52 585 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 CSRNP1Q96S65 589 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 DSCC1Q9BVC3 393 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 DHX36Q9H2U1 1008 aaKnown RBP10.08□□□□□ -0.8
TRIM48-201ENST00000417545 ZNF408Q9H9D4 720 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 TOMM22Q9NS69 142 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 SCAF8Q9UPN6 1271 aaKnown RBP10.08□□□□□ -0.8
TRIM48-201ENST00000417545 LAMA4Q16363 1823 aa10.08□□□□□ -0.8
TRIM48-201ENST00000417545 GSG1L2A8MUP6 293 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 ADM5C9JUS6 153 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 ZNF213O14771 459 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 WDHD1O75717 1129 aaPredicted RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 VPS53Q5VIR6 699 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 DCAF15Q66K64 600 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 MAP1SQ66K74 1059 aaPredicted RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 CHADLQ6NUI6 762 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 USP48Q86UV5 1035 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 GLIS2Q9BZE0 524 aaPredicted RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 DEFB129Q9H1M3 183 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 ZNF287Q9HBT7 754 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 DCP1AQ9NPI6 582 aaPredicted RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 DDX4Q9NQI0 724 aaKnown RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 USP17L12C9JPN9 530 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 USP17L21D6R901 530 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 POTEIP0CG38 1075 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 POTEJP0CG39 1038 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 PDE4BQ07343 736 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 SUPT20HL1Q3ZLR7 823 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 STK11IPQ8N1F8 1099 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 ZNF784Q8NCA9 323 aaPredicted RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 SMC1BQ8NDV3 1235 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 TMEM39BQ9GZU3 492 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 FAM198AQ9UFP1 575 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 PALD1Q9ULE6 856 aa10.07□□□□□ -0.8
TRIM48-201ENST00000417545 RBM8AQ9Y5S9 174 aaKnown RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 DDX60LQ5H9U9 1706 aaKnown RBP10.07□□□□□ -0.8
TRIM48-201ENST00000417545 UTRNP46939 3433 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms