RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 TRIM27P14373 513 aa22.41■■□□□ 1.18
VCP-202ENST00000417448 BMP8BP34820 402 aa22.41■■□□□ 1.18
VCP-202ENST00000417448 NOL9Q5SY16 702 aaKnown RBP22.41■■□□□ 1.18
VCP-202ENST00000417448 KAZALD1Q96I82 304 aa22.41■■□□□ 1.18
VCP-202ENST00000417448 PHIPQ8WWQ0 1821 aa22.41■■□□□ 1.18
VCP-202ENST00000417448 DOCK2Q92608 1830 aa22.41■■□□□ 1.18
VCP-202ENST00000417448 PXYLP1Q8TE99 480 aa22.4■■□□□ 1.18
VCP-202ENST00000417448 FAM151AQ8WW52 585 aa22.4■■□□□ 1.18
VCP-202ENST00000417448 STXBP5LQ9Y2K9 1186 aa22.4■■□□□ 1.18
VCP-202ENST00000417448 MROH5Q6ZUA9 1318 aa22.39■■□□□ 1.18
VCP-202ENST00000417448 LAMA2P24043 3122 aaKnown RBP22.39■■□□□ 1.17
VCP-202ENST00000417448 FRAT2O75474 233 aaPredicted RBP22.39■■□□□ 1.17
VCP-202ENST00000417448 TCP10Q12799 353 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 NFIAQ12857 509 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 HHIPL2Q6UWX4 724 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 ATF7IPQ6VMQ6 1270 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 SUCLG2Q96I99 432 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 USP44Q9H0E7 712 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 RCAN3Q9UKA8 241 aa22.39■■□□□ 1.17
VCP-202ENST00000417448 SPTBN5Q9NRC6 3674 aaKnown RBP22.38■■□□□ 1.17
VCP-202ENST00000417448 DDX60LQ5H9U9 1706 aaKnown RBP22.38■■□□□ 1.17
VCP-202ENST00000417448 IPO8O15397 1037 aaKnown RBP22.38■■□□□ 1.17
VCP-202ENST00000417448 BCAMP50895 628 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 IRF5Q13568 498 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 ZKSCAN2Q63HK3 967 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 C7orf61Q8IZ16 206 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 VGLL2Q8N8G2 317 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 ARHGAP45Q92619 1136 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 COL25A1Q9BXS0 654 aaPredicted RBP22.38■■□□□ 1.17
VCP-202ENST00000417448 ZMYND8Q9ULU4 1186 aaPredicted RBP22.38■■□□□ 1.17
VCP-202ENST00000417448 EYSQ5T1H1 3165 aa22.38■■□□□ 1.17
VCP-202ENST00000417448 MAST3O60307 1309 aa22.37■■□□□ 1.17
VCP-202ENST00000417448 CXCL11O14625 94 aa22.37■■□□□ 1.17
VCP-202ENST00000417448 LRRC24Q50LG9 513 aa22.37■■□□□ 1.17
VCP-202ENST00000417448 MTMR10Q9NXD2 777 aa22.37■■□□□ 1.17
VCP-202ENST00000417448 A0A0G2JLL6 359 aaPredicted RBP22.36■■□□□ 1.17
VCP-202ENST00000417448 TNPO2O14787 897 aaKnown RBP22.36■■□□□ 1.17
VCP-202ENST00000417448 LRIT3Q3SXY7 679 aa22.36■■□□□ 1.17
VCP-202ENST00000417448 CAVIN4Q5BKX8 364 aa22.36■■□□□ 1.17
VCP-202ENST00000417448 NECAB2Q7Z6G3 386 aa22.36■■□□□ 1.17
VCP-202ENST00000417448 PRRT2Q7Z6L0 340 aaPredicted RBP22.36■■□□□ 1.17
VCP-202ENST00000417448 SUGT1Q9Y2Z0 365 aa22.36■■□□□ 1.17
VCP-202ENST00000417448 ATRNL1Q5VV63 1379 aa22.36■■□□□ 1.17
VCP-202ENST00000417448 DOCK1Q14185 1865 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 RLBP1P12271 317 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 CAPN2P17655 700 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 CDC42EP5Q6NZY7 148 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 TMEM57Q8N5G2 664 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 FAM198AQ9UFP1 575 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 DAGLAQ9Y4D2 1042 aa22.35■■□□□ 1.17
VCP-202ENST00000417448 SYN1P17600 705 aa22.34■■□□□ 1.17
VCP-202ENST00000417448 ZFPM1Q8IX07 1006 aa22.34■■□□□ 1.17
VCP-202ENST00000417448 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.34■■□□□ 1.17
VCP-202ENST00000417448 TAOK2Q9UL54 1235 aa22.34■■□□□ 1.17
VCP-202ENST00000417448 ZHX2Q9Y6X8 837 aa22.34■■□□□ 1.17
VCP-202ENST00000417448 UTYO14607 1347 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 PHF20L1A8MW92 1017 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 PDE8BO95263 885 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 MAGEA10P43363 369 aaPredicted RBP22.33■■□□□ 1.17
VCP-202ENST00000417448 DIXDC1Q155Q3 683 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 METTL24Q5JXM2 366 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 PANK1Q8TE04 598 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 MEIS3Q99687 375 aa22.33■■□□□ 1.17
VCP-202ENST00000417448 GADL1Q6ZQY3 521 aa22.32■■□□□ 1.16
VCP-202ENST00000417448 FASTKD5Q7L8L6 764 aaKnown RBP22.32■■□□□ 1.16
VCP-202ENST00000417448 TDHQ8IZJ6 230 aa22.32■■□□□ 1.16
VCP-202ENST00000417448 BICC1Q9H694 974 aaKnown RBP22.32■■□□□ 1.16
VCP-202ENST00000417448 AFG3L2Q9Y4W6 797 aa22.32■■□□□ 1.16
VCP-202ENST00000417448 PLXNB2O15031 1838 aa22.31■■□□□ 1.16
VCP-202ENST00000417448 PTPRAP18433 802 aa22.31■■□□□ 1.16
VCP-202ENST00000417448 SCYL3Q8IZE3 742 aa22.31■■□□□ 1.16
VCP-202ENST00000417448 ANKLE1Q8NAG6 615 aa22.31■■□□□ 1.16
VCP-202ENST00000417448 SLC45A1Q9Y2W3 748 aa22.31■■□□□ 1.16
VCP-202ENST00000417448 SLURP2P0DP57 97 aa22.3■■□□□ 1.16
VCP-202ENST00000417448 ANKRD44Q8N8A2 993 aa22.3■■□□□ 1.16
VCP-202ENST00000417448 SMCR8Q8TEV9 937 aaPredicted RBP22.3■■□□□ 1.16
VCP-202ENST00000417448 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.3■■□□□ 1.16
VCP-202ENST00000417448 FGFR2P21802 821 aa22.29■■□□□ 1.16
VCP-202ENST00000417448 TRIM32Q13049 653 aa22.29■■□□□ 1.16
VCP-202ENST00000417448 RABL6Q3YEC7 729 aaPredicted RBP22.29■■□□□ 1.16
VCP-202ENST00000417448 FTSJ3Q8IY81 847 aaKnown RBP22.29■■□□□ 1.16
VCP-202ENST00000417448 ANKRD13CQ8N6S4 541 aa22.29■■□□□ 1.16
VCP-202ENST00000417448 KLHDC4Q8TBB5 520 aa22.29■■□□□ 1.16
VCP-202ENST00000417448 MYH2Q9UKX2 1941 aa22.28■■□□□ 1.16
VCP-202ENST00000417448 UBTFL1P0CB47 393 aaPredicted RBP22.28■■□□□ 1.16
VCP-202ENST00000417448 PRDX5P30044 214 aa22.28■■□□□ 1.16
VCP-202ENST00000417448 COA7Q96BR5 231 aa22.28■■□□□ 1.16
VCP-202ENST00000417448 NBPF3Q9H094 633 aa22.28■■□□□ 1.16
VCP-202ENST00000417448 LRRFIP2Q9Y608 721 aaKnown RBP22.28■■□□□ 1.16
VCP-202ENST00000417448 LOC285556D6RIA3 1793 aa22.27■■□□□ 1.16
VCP-202ENST00000417448 C20orf194Q5TEA3 1177 aa22.27■■□□□ 1.16
VCP-202ENST00000417448 CCDC84Q86UT8 332 aaPredicted RBP22.27■■□□□ 1.16
VCP-202ENST00000417448 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.27■■□□□ 1.16
VCP-202ENST00000417448 PICK1Q9NRD5 415 aa22.27■■□□□ 1.16
VCP-202ENST00000417448 USP40Q9NVE5 1235 aa22.27■■□□□ 1.16
VCP-202ENST00000417448 DNAH12Q6ZR08 3092 aa22.27■■□□□ 1.15
VCP-202ENST00000417448 PRUNE2Q8WUY3 3088 aa22.26■■□□□ 1.15
VCP-202ENST00000417448 HMGCRP04035 888 aa22.26■■□□□ 1.15
VCP-202ENST00000417448 TREML2Q5T2D2 321 aa22.26■■□□□ 1.15
VCP-202ENST00000417448 SH3BP5LQ7L8J4 393 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms