RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ETF1P62495 437 aaKnown RBP11.26□□□□□ -0.61
CD44-206ENST00000415148 TTLL11Q8NHH1 800 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 ZBTB9Q96C00 473 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.26□□□□□ -0.61
CD44-206ENST00000415148 TBC1D2BQ9UPU7 963 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 COL5A2P05997 1499 aaPredicted RBP11.26□□□□□ -0.61
CD44-206ENST00000415148 SERPINC1P01008 464 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 PNMA6AP0CW24 399 aaPredicted RBP11.26□□□□□ -0.61
CD44-206ENST00000415148 ITGA6P23229 1130 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 CDC27P30260 824 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 KRBA2Q6ZNG9 492 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 TBC1D10CQ8IV04 446 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 VGLL2Q8N8G2 317 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 TRERF1Q96PN7 1200 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 MTA3Q9BTC8 594 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 CNNM2Q9H8M5 875 aa11.26□□□□□ -0.61
CD44-206ENST00000415148 PATL2C9JE40 543 aaKnown RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 PDE8BO95263 885 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 STARD3NLO95772 234 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 RXRAP19793 462 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 SSRP1Q08945 709 aaKnown RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 PNOCQ13519 176 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 VSTM4Q8IW00 320 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 FAM177A1Q8N128 213 aaPredicted RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 LY9Q9HBG7 655 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 PRDM11Q9NQV5 511 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 TMOD3Q9NYL9 352 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 KCNH3Q9ULD8 1083 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 LRP6O75581 1613 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 TCRBV5S4A2TA0A5A2 114 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 FOXN1O15353 648 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 ZSCAN12O43309 604 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 FMNL1O95466 1100 aaPredicted RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 APPP05067 770 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 GTF2E1P29083 439 aaPredicted RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 CTSWP56202 376 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 MDM2Q00987 491 aaPredicted RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 BMS1Q14692 1282 aaKnown RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 PI16Q6UXB8 463 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 HOMER1Q86YM7 354 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 CREBRFQ8IUR6 639 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 REXO1L1PQ8IX06 675 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 KRI1Q8N9T8 703 aaKnown RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 CNNM3Q8NE01 707 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 CLIC6Q96NY7 704 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 STRBPQ96SI9 672 aaKnown RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 SENP2Q9HC62 589 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 CNNM1Q9NRU3 951 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 FAM217BQ9NTX9 383 aaPredicted RBP11.25□□□□□ -0.61
CD44-206ENST00000415148 INTS13Q9NVM9 706 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 ZNF532Q9HCE3 1301 aa11.25□□□□□ -0.61
CD44-206ENST00000415148 STRCP1A6NGW2 1772 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 GOLGA6L9A6NEM1 432 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 GOLGA8AA7E2F4 631 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 B4E1Z4 1266 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 SASH3O75995 380 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 ZRANB2O95218 330 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-206ENST00000415148 TPM1P09493 284 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 PDE6AP16499 860 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 IFNAR1P17181 557 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 PDE4BQ07343 736 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 NT5DC1Q5TFE4 455 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 NFXL1Q6ZNB6 911 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 NLRP10Q86W26 655 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 METTL16Q86W50 562 aaKnown RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 FOXP4Q8IVH2 680 aaPredicted RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 ZNF579Q8NAF0 562 aaKnown RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 UTP14AQ9BVJ6 771 aaKnown RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 CARD6Q9BX69 1037 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 KRT23Q9C075 422 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 ZCCHC17Q9NP64 241 aaKnown RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 PIH1D3Q9NQM4 214 aaKnown RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 DACH1Q9UI36 760 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 ECM29Q5VYK3 1845 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 TOP1P11387 765 aaKnown RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 RCAN1P53805 252 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 IRX5P78411 483 aaPredicted RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 SAFBQ15424 915 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-206ENST00000415148 CFAP100Q494V2 611 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 LONRF3Q496Y0 759 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 TMEM67Q5HYA8 995 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 CT47A1Q5JQC4 288 aaPredicted RBP11.24□□□□□ -0.61
CD44-206ENST00000415148 TAF3Q5VWG9 929 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 TMTC2Q8N394 836 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 TRIML1Q8N9V2 468 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 MLKLQ8NB16 471 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 GREM2Q9H772 168 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 SLC12A7Q9Y666 1083 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 UBN2Q6ZU65 1347 aa11.24□□□□□ -0.61
CD44-206ENST00000415148 POLR3GO15318 223 aaPredicted RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 ARHGAP6O43182 974 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 PDE8AO60658 829 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 IDH1O75874 414 aaKnown RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 BMP6P22004 513 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 TBX2Q13207 712 aaPredicted RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 KANK3Q6NY19 840 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 TMEM139Q8IV31 216 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 NOSTRINQ8IVI9 506 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 LPIN2Q92539 896 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 PHKBQ93100 1093 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms