RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 USP40Q9NVE5 1235 aa18.43■□□□□ 0.54
SHMT2-202ENST00000414700 TACC3Q9Y6A5 838 aa18.43■□□□□ 0.54
SHMT2-202ENST00000414700 RPAP1Q9BWH6 1393 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-202ENST00000414700 USP17L12C9JPN9 530 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 USP17L21D6R901 530 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 WDHD1O75717 1129 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-202ENST00000414700 EGFRP00533 1210 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 CASTP20810 708 aaKnown RBP18.42■□□□□ 0.54
SHMT2-202ENST00000414700 GMPSP49915 693 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-202ENST00000414700 CTDSPL2Q05D32 466 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 C9orf131Q5VYM1 1079 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 CTR9Q6PD62 1173 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 OGFOD1Q8N543 542 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 NKX2-3Q8TAU0 364 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 DDX4Q9NQI0 724 aaKnown RBP18.42■□□□□ 0.54
SHMT2-202ENST00000414700 ATP8A2Q9NTI2 1148 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 MYH1P12882 1939 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 MINDY4BA8MYZ0 360 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 E7EWF7 191 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 NFIAQ12857 509 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 RABEP1Q15276 862 aa18.42■□□□□ 0.54
SHMT2-202ENST00000414700 DDX60LQ5H9U9 1706 aaKnown RBP18.42■□□□□ 0.54
SHMT2-202ENST00000414700 FLT1P17948 1338 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 LAMB1P07942 1786 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 CYP2D6P10635 497 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 PLCG2P16885 1265 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 NEK4P51957 841 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 PICALMQ13492 652 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 TCEANC2Q96MN5 208 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 TDRD3Q9H7E2 651 aaKnown RBP18.41■□□□□ 0.54
SHMT2-202ENST00000414700 MCM9Q9NXL9 1143 aa18.41■□□□□ 0.54
SHMT2-202ENST00000414700 GIMAP6Q6P9H5 292 aa18.4■□□□□ 0.54
SHMT2-202ENST00000414700 SAP30BPQ9UHR5 308 aaKnown RBP18.4■□□□□ 0.54
SHMT2-202ENST00000414700 HDAC9Q9UKV0 1011 aa18.4■□□□□ 0.54
SHMT2-202ENST00000414700 SPDYE2BA6NHP3 402 aa18.4■□□□□ 0.54
SHMT2-202ENST00000414700 SPDYE6P0CI01 402 aa18.4■□□□□ 0.54
SHMT2-202ENST00000414700 PPARAQ07869 468 aa18.4■□□□□ 0.54
SHMT2-202ENST00000414700 CERS3Q8IU89 383 aa18.4■□□□□ 0.54
SHMT2-202ENST00000414700 RRP9O43818 475 aaKnown RBP18.39■□□□□ 0.53
SHMT2-202ENST00000414700 MICALL2Q8IY33 904 aa18.39■□□□□ 0.53
SHMT2-202ENST00000414700 ZSWIM6Q9HCJ5 1215 aa18.39■□□□□ 0.53
SHMT2-202ENST00000414700 DDNO94850 711 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-202ENST00000414700 RPS12P25398 132 aaKnown RBP18.39■□□□□ 0.53
SHMT2-202ENST00000414700 CLCN1P35523 988 aa18.39■□□□□ 0.53
SHMT2-202ENST00000414700 DLGAP5Q15398 846 aa18.39■□□□□ 0.53
SHMT2-202ENST00000414700 NAP1L5Q96NT1 182 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-202ENST00000414700 NEK1Q96PY6 1258 aa18.39■□□□□ 0.53
SHMT2-202ENST00000414700 MYOZ2Q9NPC6 264 aa18.39■□□□□ 0.53
SHMT2-202ENST00000414700 NEDD4P46934 1319 aa18.38■□□□□ 0.53
SHMT2-202ENST00000414700 NBPF9Q3BBW0 867 aa18.38■□□□□ 0.53
SHMT2-202ENST00000414700 SAMD7Q7Z3H4 446 aa18.38■□□□□ 0.53
SHMT2-202ENST00000414700 ZFPM1Q8IX07 1006 aa18.38■□□□□ 0.53
SHMT2-202ENST00000414700 GPC2Q8N158 579 aa18.38■□□□□ 0.53
SHMT2-202ENST00000414700 TM6SF1Q9BZW5 370 aa18.38■□□□□ 0.53
SHMT2-202ENST00000414700 CNOT7Q9UIV1 285 aaKnown RBP18.38■□□□□ 0.53
SHMT2-202ENST00000414700 CLRN2A0PK11 232 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 WNT10BO00744 389 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 GRIN3BO60391 1043 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 PLCD1P51178 756 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 KRT32Q14532 448 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 RBM26Q5T8P6 1007 aaKnown RBP18.37■□□□□ 0.53
SHMT2-202ENST00000414700 RUFY3Q7L099 469 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 CHST3Q7LGC8 479 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 DPF2Q92785 391 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 TBC1D2Q9BYX2 928 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 ZNF280AP59817 542 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-202ENST00000414700 TCP10Q12799 353 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 TTC14Q96N46 770 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 LARP6Q9BRS8 491 aaKnown RBP18.37■□□□□ 0.53
SHMT2-202ENST00000414700 ARPP21Q9UBL0 812 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-202ENST00000414700 FAM198AQ9UFP1 575 aa18.37■□□□□ 0.53
SHMT2-202ENST00000414700 HSP90AA1P07900 732 aaKnown RBP18.36■□□□□ 0.53
SHMT2-202ENST00000414700 SBK1Q52WX2 424 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 AKNAD1Q5T1N1 836 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 C12orf60Q5U649 245 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 BLOC1S2Q6QNY1 142 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 ZBED3Q96IU2 234 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-202ENST00000414700 LRRC2Q9BYS8 371 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 ANAPC4Q9UJX5 808 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 SCAF8Q9UPN6 1271 aaKnown RBP18.36■□□□□ 0.53
SHMT2-202ENST00000414700 CYP46A1Q9Y6A2 500 aa18.36■□□□□ 0.53
SHMT2-202ENST00000414700 RPS6KB1P23443 525 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 PSMA5P28066 241 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 HSP90AA2PQ14568 343 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-202ENST00000414700 TBC1D10BQ4KMP7 808 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-202ENST00000414700 NOL8Q76FK4 1167 aaKnown RBP18.35■□□□□ 0.53
SHMT2-202ENST00000414700 MTMR14Q8NCE2 650 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 DYNLL2Q96FJ2 89 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 FSD2A1L4K1 749 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 GOLGA6L3A6NEY3 463 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 B4E1Z4 1266 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 PRDM1O75626 825 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 SLURP2P0DP57 97 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 STAG1Q8WVM7 1258 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 IDI2Q9BXS1 227 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 OSBPL5Q9H0X9 879 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-202ENST00000414700 GPRC5DQ9NZD1 345 aa18.35■□□□□ 0.53
SHMT2-202ENST00000414700 ASTN2O75129 1339 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-202ENST00000414700 POLR3DP05423 398 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-202ENST00000414700 EPS15P42566 896 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms