RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SH2B2O14492 632 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 WDHD1O75717 1129 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 UBASH3AP57075 661 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 SEMA3FQ13275 785 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 PPP2R5BQ15173 497 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 NBPF14Q5TI25 921 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 NBPF10Q6P3W6 841 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 CPLX2Q6PUV4 134 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 SHC4Q6S5L8 630 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 SYT10Q6XYQ8 523 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 KRBA2Q6ZNG9 492 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 NBPF15Q8N660 670 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 UBXN4Q92575 508 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF592Q92610 1267 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 PANX2Q96RD6 677 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 LRRC2Q9BYS8 371 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 MRFAP1Q9Y605 127 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 DISP2A7MBM2 1401 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 PCDH11XQ9BZA7 1347 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 PCDH11YQ9BZA8 1340 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 MAST2Q6P0Q8 1798 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 MYH1P12882 1939 aa6.6□□□□□ -1.35
CCDC88A-203ENST00000412148 GOLGA8BA8MQT2 603 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 KIF28PB7ZC32 967 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 SMC2O95347 1197 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 PCCAP05165 728 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 GTF2E1P29083 439 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 USP5P45974 858 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 PLA2G4AP47712 749 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CEBPZQ03701 1054 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 SLC39A6Q13433 755 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 ERCC6LQ2NKX8 1250 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 TEX35Q5T0J7 233 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CCDC102BQ68D86 513 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 TMCO3Q6UWJ1 677 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 OLFM4Q6UX06 510 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 IQUBQ8NA54 791 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CEP126Q9P2H0 1117 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 ITIH6Q6UXX5 1313 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CCDC151A5D8V7 595 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 VWA3AA6NCI4 1184 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF213O14771 459 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 ADD2P35612 726 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 C1QBPQ07021 282 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 BRD3Q15059 726 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 RALYLQ86SE5 291 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CADPS2Q86UW7 1296 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 METTL16Q86W50 562 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 VPS37DQ86XT2 251 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 TXLNBQ8N3L3 684 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 KIFC2Q96AC6 838 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CCDC51Q96ER9 411 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 FOXP1Q9H334 677 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 TRMT1Q9NXH9 659 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 PPP2R2CQ9Y2T4 447 aa6.59□□□□□ -1.35
CCDC88A-203ENST00000412148 CPLX1O14810 134 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 DTNBO60941 627 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 TOP1P11387 765 aaKnown RBP6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 CDK11BP21127 795 aaKnown RBP6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 PTPREP23469 700 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 ARID4AP29374 1257 aaPredicted RBP6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 MORC3Q14149 939 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 ARHGAP29Q52LW3 1261 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 APOA5Q6Q788 366 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 NBPF3Q9H094 633 aa6.59□□□□□ -1.36
CCDC88A-203ENST00000412148 A0A1B0GTH6 734 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 MAP2K7O14733 419 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 FMNL1O95466 1100 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 CHGBP05060 677 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 IFNAR1P17181 557 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 CABP4P57796 275 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 TIMM10P62072 90 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 TCIRG1Q13488 830 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 RILPL1Q5EBL4 403 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 SPECC1LQ69YQ0 1117 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 KRT40Q6A162 431 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 NUTM2AQ8IVF1 878 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 KRI1Q8N9T8 703 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 TC2NQ8N9U0 490 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 IGDCC4Q8TDY8 1250 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 XAGE2Q96GT9 111 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 AK7Q96M32 723 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 ORAI2Q96SN7 254 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 TEX13AQ9BXU3 409 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 CNNM2Q9H8M5 875 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 INTS13Q9NVM9 706 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 MYO1AQ9UBC5 1043 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 RAB21Q9UL25 225 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 SCN7AQ01118 1682 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 FANCGO15287 622 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 RPS6KA5O75582 802 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 PBX1P40424 430 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 TRDNQ13061 729 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 NR1I3Q14994 352 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 TTC39AQ5SRH9 613 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 CC2D1AQ6P1N0 951 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 VGLL2Q8N8G2 317 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 MSANTD4Q8NCY6 345 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms