RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MAK16Q9BXY0 300 aaKnown RBP14.34□□□□□ -0.11
COL6A3-206ENST00000409809 ESYT1Q9BSJ8 1104 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 A0A1B0GW55 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4L2P0CJ85 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4L3P0CJ86 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4L4P0CJ87 422 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4L5P0CJ88 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4L6P0CJ89 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4L7P0CJ90 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 ZNF449Q6P9G9 518 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 TFIP11Q9UBB9 837 aaKnown RBP14.33□□□□□ -0.11
COL6A3-206ENST00000409809 DUX4Q9UBX2 424 aa14.33□□□□□ -0.11
COL6A3-206ENST00000409809 KRT3P12035 628 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 GNGT1P63211 74 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 PHEXP78562 749 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 ATP2B2Q01814 1243 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 BBOF1Q8ND07 529 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 MTMR7Q9Y216 660 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 ZMYM4Q5VZL5 1548 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 CTNNA1P35221 906 aaKnown RBP14.33□□□□□ -0.12
COL6A3-206ENST00000409809 HS2ST1Q7LGA3 356 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 THEMISQ8N1K5 641 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-206ENST00000409809 GNAT3A8MTJ3 354 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 ALS2CLQ60I27 953 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 DDX41Q9UJV9 622 aaKnown RBP14.33□□□□□ -0.12
COL6A3-206ENST00000409809 DRP2Q13474 957 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 CAVIN4Q5BKX8 364 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 MMRN2Q9H8L6 949 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 IFIT1P09914 478 aaKnown RBP14.33□□□□□ -0.12
COL6A3-206ENST00000409809 INPP1P49441 399 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 ORC6Q9Y5N6 252 aa14.33□□□□□ -0.12
COL6A3-206ENST00000409809 IDH1O75874 414 aaKnown RBP14.32□□□□□ -0.12
COL6A3-206ENST00000409809 GGNBP2Q9H3C7 697 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 RUSC2Q8N2Y8 1516 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 CRCPO75575 148 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 CLTAP09496 248 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 MKNK2Q9HBH9 465 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 PRG4Q92954 1404 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-206ENST00000409809 EIF3DO15371 548 aaKnown RBP eCLIP14.32□□□□□ -0.12
COL6A3-206ENST00000409809 ZBTB43O43298 467 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 MRPS9P82933 396 aaKnown RBP14.32□□□□□ -0.12
COL6A3-206ENST00000409809 PFDN4Q9NQP4 134 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 RNF14Q9UBS8 474 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 PLCD1P51178 756 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 TADA2BQ86TJ2 420 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 UIMC1Q96RL1 719 aa14.32□□□□□ -0.12
COL6A3-206ENST00000409809 RPRD2Q5VT52 1461 aaKnown RBP14.32□□□□□ -0.12
COL6A3-206ENST00000409809 TTC21BQ7Z4L5 1316 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 ARHGAP10A1A4S6 786 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 ARHGAP42A6NI28 874 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 E9PMD0 336 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 SPECC1L-ADORA2AF8WAN1 911 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 LIG3P49916 1009 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-206ENST00000409809 TCP1P17987 556 aaKnown RBP14.31□□□□□ -0.12
COL6A3-206ENST00000409809 ASIC1P78348 528 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 MCF2L2Q86YR7 1114 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 ZRANB1Q9UGI0 708 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 ARHGEF9O43307 516 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 MAP3K7O43318 606 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 NBPF14Q5TI25 921 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 NUTM2BA6NNL0 878 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-206ENST00000409809 NUTM2EB1AL46 878 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-206ENST00000409809 SLC5A1P13866 664 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 RUBCNQ92622 972 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 JPH2Q9BR39 696 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-206ENST00000409809 RBSNQ9H1K0 784 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 WWC3Q9ULE0 1092 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 GNAT2P19087 354 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 KCNA4P22459 653 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 PLCB3Q01970 1234 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 PIP4K2CQ8TBX8 421 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 CARD6Q9BX69 1037 aa14.31□□□□□ -0.12
COL6A3-206ENST00000409809 ZBTB12Q9Y330 459 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-206ENST00000409809 DDX21Q9NR30 783 aaKnown RBP eCLIP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 UNC13AQ9UPW8 1703 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 KARSQ15046 597 aaKnown RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 PRPF31Q8WWY3 499 aaKnown RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 CCDC93Q567U6 631 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 FRMD4BQ9Y2L6 1034 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 IGSF3O75054 1194 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 LIN9Q5TKA1 542 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 ALG1Q9BT22 464 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 ARAP1Q96P48 1450 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 BTBD11A6QL63 1104 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 EIF3CLB5ME19 914 aaKnown RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 POLR3DP05423 398 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 ARL1P40616 181 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 EIF3CQ99613 913 aaKnown RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 IL1RAPL2Q9NP60 686 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 GNA14O95837 355 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 TATP17735 454 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 TRIM60Q495X7 471 aa14.3□□□□□ -0.12
COL6A3-206ENST00000409809 PAWRQ96IZ0 340 aaKnown RBP14.3□□□□□ -0.12
COL6A3-206ENST00000409809 EIF3BP55884 814 aaKnown RBP14.29□□□□□ -0.12
COL6A3-206ENST00000409809 ZNF652Q9Y2D9 606 aa14.29□□□□□ -0.12
COL6A3-206ENST00000409809 CHMP2AO43633 222 aa14.29□□□□□ -0.12
COL6A3-206ENST00000409809 GRAMD4Q6IC98 578 aa14.29□□□□□ -0.12
COL6A3-206ENST00000409809 ETF1P62495 437 aaKnown RBP14.29□□□□□ -0.12
COL6A3-206ENST00000409809 RTN1Q16799 776 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms