RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 TAOK3Q9H2K8 898 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 ATP8A2Q9NTI2 1148 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 BRCA1P38398 1863 aaKnown RBP14.72□□□□□ -0.05
CHMP3-204ENST00000409727 GAKO14976 1311 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 COL4A5P29400 1685 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 USP17L8P0C7I0 530 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 IARSP41252 1262 aaKnown RBP14.72□□□□□ -0.05
CHMP3-204ENST00000409727 ANTXR2P58335 489 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 PPP4CP60510 307 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 APOBRQ0VD83 1088 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 CUL4AQ13619 759 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 CYB5R4Q7L1T6 521 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 ALDH8A1Q9H2A2 487 aaPredicted RBP14.72□□□□□ -0.05
CHMP3-204ENST00000409727 SAP30BPQ9UHR5 308 aaKnown RBP14.72□□□□□ -0.05
CHMP3-204ENST00000409727 ADAMTSL1Q8N6G6 1762 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 KDM4AO75164 1064 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 RBM5P52756 815 aaKnown RBP eCLIP14.71□□□□□ -0.05
CHMP3-204ENST00000409727 GIMAP6Q6P9H5 292 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 NIM1KQ8IY84 436 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 STAG1Q8WVM7 1258 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 TEKT1Q969V4 418 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 FAM163AQ96GL9 167 aaPredicted RBP14.71□□□□□ -0.05
CHMP3-204ENST00000409727 ZSCAN31Q96LW9 406 aaPredicted RBP14.71□□□□□ -0.05
CHMP3-204ENST00000409727 CHMP5Q9NZZ3 219 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 PCDHAC2Q9Y5I4 1007 aa14.71□□□□□ -0.05
CHMP3-204ENST00000409727 PRDM1O75626 825 aa14.7□□□□□ -0.06
CHMP3-204ENST00000409727 DDIT3P35638 169 aa14.7□□□□□ -0.06
CHMP3-204ENST00000409727 SH2B1Q9NRF2 756 aaPredicted RBP14.7□□□□□ -0.06
CHMP3-204ENST00000409727 ARPP21Q9UBL0 812 aaPredicted RBP14.7□□□□□ -0.06
CHMP3-204ENST00000409727 NFKBIEO00221 500 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 PLCG2P16885 1265 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 CRKP46108 304 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 RHBDL3P58872 404 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 RASSF7Q02833 373 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 ST3GAL1Q11201 340 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 PICALMQ13492 652 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 KRT23Q9C075 422 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 RNF41Q9H4P4 317 aaPredicted RBP14.69□□□□□ -0.06
CHMP3-204ENST00000409727 ZSWIM5Q9P217 1185 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 TIAM2Q8IVF5 1701 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 PSMD14O00487 310 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 ZKSCAN3Q9BRR0 538 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 FHDC1Q9C0D6 1143 aaPredicted RBP14.69□□□□□ -0.06
CHMP3-204ENST00000409727 CNNM2Q9H8M5 875 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 USP40Q9NVE5 1235 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 ANAPC4Q9UJX5 808 aa14.69□□□□□ -0.06
CHMP3-204ENST00000409727 FLT1P17948 1338 aa14.68□□□□□ -0.06
CHMP3-204ENST00000409727 POLR3DP05423 398 aaPredicted RBP14.68□□□□□ -0.06
CHMP3-204ENST00000409727 FKBP1AP62942 108 aaKnown RBP14.68□□□□□ -0.06
CHMP3-204ENST00000409727 RAB11FIP4Q86YS3 637 aa14.68□□□□□ -0.06
CHMP3-204ENST00000409727 CERS3Q8IU89 383 aa14.68□□□□□ -0.06
CHMP3-204ENST00000409727 INTS4Q96HW7 963 aaKnown RBP14.68□□□□□ -0.06
CHMP3-204ENST00000409727 MKRN1Q9UHC7 482 aaKnown RBP14.68□□□□□ -0.06
CHMP3-204ENST00000409727 ZNRF3Q9ULT6 936 aa14.68□□□□□ -0.06
CHMP3-204ENST00000409727 ZBTB12Q9Y330 459 aaPredicted RBP14.68□□□□□ -0.06
CHMP3-204ENST00000409727 PKP1Q13835 747 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 HHIPL2Q6UWX4 724 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 AMOTL1Q8IY63 956 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 JDP2Q8WYK2 163 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 CWC22Q9HCG8 908 aaKnown RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 ZNF646O15015 1829 aaPredicted RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 RANBP6O60518 1105 aaKnown RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 SLC3A2P08195 630 aaKnown RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 CCT2P78371 535 aaKnown RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 SBK1Q52WX2 424 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 APOBEC3HQ6NTF7 200 aaKnown RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 CDC42EP5Q6NZY7 148 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 RSBN1LQ6PCB5 846 aaPredicted RBP14.67□□□□□ -0.06
CHMP3-204ENST00000409727 DYNLL2Q96FJ2 89 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 AGXT2Q9BYV1 514 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 VPS33BQ9H267 617 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 SENP2Q9HC62 589 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 SMC3Q9UQE7 1217 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 FER1L6Q2WGJ9 1857 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 NAV1Q8NEY1 1877 aa14.67□□□□□ -0.06
CHMP3-204ENST00000409727 LAMB1P07942 1786 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 KLF18A0A0U1RQI7 1052 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 IFIT3O14879 490 aaKnown RBP14.66□□□□□ -0.06
CHMP3-204ENST00000409727 PLCD1P51178 756 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 CACNB3P54284 484 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 NBR1Q14596 966 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 TMEM67Q5HYA8 995 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 C12orf60Q5U649 245 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 ESR2Q92731 530 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 ZDHHC15Q96MV8 337 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 BRPF3Q9ULD4 1205 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 CIZ1Q9ULV3 898 aaPredicted RBP14.66□□□□□ -0.06
CHMP3-204ENST00000409727 ANGEL1Q9UNK9 670 aaKnown RBP14.66□□□□□ -0.06
CHMP3-204ENST00000409727 CDK5RAP2Q96SN8 1893 aa14.66□□□□□ -0.06
CHMP3-204ENST00000409727 SH2B2O14492 632 aaPredicted RBP14.65□□□□□ -0.06
CHMP3-204ENST00000409727 SCRN1Q12765 414 aa14.65□□□□□ -0.06
CHMP3-204ENST00000409727 FOXD4L5Q5VV16 416 aaPredicted RBP14.65□□□□□ -0.06
CHMP3-204ENST00000409727 NFXL1Q6ZNB6 911 aa14.65□□□□□ -0.06
CHMP3-204ENST00000409727 FOXD4L4Q8WXT5 416 aaPredicted RBP14.65□□□□□ -0.06
CHMP3-204ENST00000409727 GTF3C6Q969F1 213 aa14.65□□□□□ -0.06
CHMP3-204ENST00000409727 NCOA5Q9HCD5 579 aaKnown RBP14.65□□□□□ -0.06
CHMP3-204ENST00000409727 DDX4Q9NQI0 724 aaKnown RBP14.65□□□□□ -0.06
CHMP3-204ENST00000409727 WDR19Q8NEZ3 1342 aa14.65□□□□□ -0.06
CHMP3-204ENST00000409727 GOLGA8BA8MQT2 603 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms