RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 SPON1Q9HCB6 807 aa13.18□□□□□ -0.3
SNX13-202ENST00000409604 STAP2Q9UGK3 403 aa13.18□□□□□ -0.3
SNX13-202ENST00000409604 TRIM28Q13263 835 aaKnown RBP13.17□□□□□ -0.3
SNX13-202ENST00000409604 CCDC174Q6PII3 467 aa13.17□□□□□ -0.3
SNX13-202ENST00000409604 FSIP1Q8NA03 581 aa13.17□□□□□ -0.3
SNX13-202ENST00000409604 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.17□□□□□ -0.3
SNX13-202ENST00000409604 COL3A1P02461 1466 aaPredicted RBP13.17□□□□□ -0.3
SNX13-202ENST00000409604 TRIM5Q9C035 493 aa13.17□□□□□ -0.3
SNX13-202ENST00000409604 ADD2P35612 726 aa13.17□□□□□ -0.3
SNX13-202ENST00000409604 ANAPC15P60006 121 aa13.17□□□□□ -0.3
SNX13-202ENST00000409604 JAKMIP3Q5VZ66 844 aa13.17□□□□□ -0.3
SNX13-202ENST00000409604 SH3RF3Q8TEJ3 882 aaPredicted RBP13.17□□□□□ -0.3
SNX13-202ENST00000409604 HOOK1Q9UJC3 728 aaKnown RBP13.17□□□□□ -0.3
SNX13-202ENST00000409604 ECE2O60344 883 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 SMC2O95347 1197 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 KIFC2Q96AC6 838 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 VPS54Q9P1Q0 977 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 USP17L3A6NCW0 530 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 USP17L4A6NCW7 530 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 MYCP01106 439 aaPredicted RBP13.16□□□□□ -0.3
SNX13-202ENST00000409604 MCM7P33993 719 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 ZMYM1Q5SVZ6 1142 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 USP17L1Q7RTZ2 530 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 FAM13BQ9NYF5 915 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 TPCN1Q9ULQ1 816 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 CUL5Q93034 780 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 LSG1Q9H089 658 aaKnown RBP13.16□□□□□ -0.3
SNX13-202ENST00000409604 PICK1Q9NRD5 415 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 GJB4Q9NTQ9 266 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 TNKSO95271 1327 aa13.16□□□□□ -0.3
SNX13-202ENST00000409604 AFMP43652 599 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 RC3H1Q5TC82 1133 aaKnown RBP13.15□□□□□ -0.3
SNX13-202ENST00000409604 NSMFQ6X4W1 530 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 ILDR1Q86SU0 546 aaPredicted RBP13.15□□□□□ -0.3
SNX13-202ENST00000409604 NMT2O60551 498 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 CALM1P0DP23 149 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 CALM2P0DP24 149 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 CALM3P0DP25 149 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 ZSCAN22P10073 491 aaPredicted RBP13.15□□□□□ -0.3
SNX13-202ENST00000409604 SLC16A2P36021 539 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 SNAP25P60880 206 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 TBC1D16Q8TBP0 767 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 ZNF592Q92610 1267 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 IL25Q9H293 177 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 MTX1Q13505 466 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 CLEC10AQ8IUN9 316 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 ZFP91Q96JP5 570 aaPredicted RBP13.15□□□□□ -0.3
SNX13-202ENST00000409604 NUP62CLQ9H1M0 184 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 BCL9O00512 1426 aa13.15□□□□□ -0.3
SNX13-202ENST00000409604 MBD3O95983 291 aa13.15□□□□□ -0.31
SNX13-202ENST00000409604 PARP1P09874 1014 aaKnown RBP13.15□□□□□ -0.31
SNX13-202ENST00000409604 ZNF174Q15697 407 aa13.15□□□□□ -0.31
SNX13-202ENST00000409604 GIMAP6Q6P9H5 292 aa13.15□□□□□ -0.31
SNX13-202ENST00000409604 PAGR1Q9BTK6 254 aa13.15□□□□□ -0.31
SNX13-202ENST00000409604 CIAPIN1Q6FI81 312 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 SULF1Q8IWU6 871 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 TMTC2Q8N394 836 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 ERCC4Q92889 916 aaPredicted RBP13.14□□□□□ -0.31
SNX13-202ENST00000409604 GPKOWQ92917 476 aaPredicted RBP eCLIP13.14□□□□□ -0.31
SNX13-202ENST00000409604 NASPP49321 788 aaPredicted RBP13.14□□□□□ -0.31
SNX13-202ENST00000409604 LETM2Q2VYF4 491 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 CCDC84Q86UT8 332 aaPredicted RBP13.14□□□□□ -0.31
SNX13-202ENST00000409604 RBM25P49756 843 aaKnown RBP13.14□□□□□ -0.31
SNX13-202ENST00000409604 CFAP100Q494V2 611 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 SLC51AQ86UW1 340 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 SMARCC2Q8TAQ2 1214 aa13.14□□□□□ -0.31
SNX13-202ENST00000409604 DDR1Q08345 913 aa13.13□□□□□ -0.31
SNX13-202ENST00000409604 CERKLQ49MI3 558 aaPredicted RBP13.13□□□□□ -0.31
SNX13-202ENST00000409604 CFBP00751 764 aa13.13□□□□□ -0.31
SNX13-202ENST00000409604 RABL6Q3YEC7 729 aaPredicted RBP13.13□□□□□ -0.31
SNX13-202ENST00000409604 USP48Q86UV5 1035 aa13.13□□□□□ -0.31
SNX13-202ENST00000409604 MAP4K1Q92918 833 aa13.13□□□□□ -0.31
SNX13-202ENST00000409604 UBE3CQ15386 1083 aa13.13□□□□□ -0.31
SNX13-202ENST00000409604 KCTD1Q719H9 257 aa13.13□□□□□ -0.31
SNX13-202ENST00000409604 UBA7P41226 1012 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 AIFM3Q96NN9 605 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 ZSWIM5Q9P217 1185 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 TAF6LQ9Y6J9 622 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 LARGE1O95461 756 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 ZNF654Q8IZM8 581 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 RRP36Q96EU6 259 aaKnown RBP13.12□□□□□ -0.31
SNX13-202ENST00000409604 FBXO3Q9UK99 471 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 CIZ1Q9ULV3 898 aaPredicted RBP13.12□□□□□ -0.31
SNX13-202ENST00000409604 AOX1Q06278 1338 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 CDHR2Q9BYE9 1310 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 RFX5P48382 616 aaPredicted RBP13.12□□□□□ -0.31
SNX13-202ENST00000409604 PIK3AP1Q6ZUJ8 805 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 FILIP1Q7Z7B0 1213 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 PNMA1Q8ND90 353 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 GPR108Q9NPR9 543 aa13.12□□□□□ -0.31
SNX13-202ENST00000409604 TRIM75PA6NK02 468 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 DDX39AO00148 427 aaKnown RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 CHMP2AO43633 222 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 CEP57L1Q8IYX8 460 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 STAMQ92783 540 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 SCLT1Q96NL6 688 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 DSCC1Q9BVC3 393 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 OSBPL3Q9H4L5 887 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 KCNQ5Q9NR82 932 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 UBXN2AP68543 259 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms