RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FAM205CA6NFA0 338 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 IKBKBO14920 756 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 RRP12Q5JTH9 1297 aaKnown RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 WWC2Q6AWC2 1192 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 KRBA2Q6ZNG9 492 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 TC2NQ8N9U0 490 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 BAG1Q99933 345 aaPredicted RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 PUF60Q9UHX1 559 aaKnown RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 ANGEL1Q9UNK9 670 aaKnown RBP24.11■■□□□ 1.45
CTCF-202ENST00000401394 UBN2Q6ZU65 1347 aa24.11■■□□□ 1.45
CTCF-202ENST00000401394 TOB1P50616 345 aaPredicted RBP24.11■■□□□ 1.45
CTCF-202ENST00000401394 STAMQ92783 540 aa24.11■■□□□ 1.45
CTCF-202ENST00000401394 ZKSCAN7Q9P0L1 754 aaPredicted RBP24.11■■□□□ 1.45
CTCF-202ENST00000401394 OAS2P29728 719 aaKnown RBP24.1■■□□□ 1.45
CTCF-202ENST00000401394 RESP18Q5W5W9 173 aa24.1■■□□□ 1.45
CTCF-202ENST00000401394 MAN1B1Q9UKM7 699 aa24.1■■□□□ 1.45
CTCF-202ENST00000401394 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.1■■□□□ 1.45
CTCF-202ENST00000401394 TEX13AQ9BXU3 409 aaPredicted RBP24.1■■□□□ 1.45
CTCF-202ENST00000401394 PARD6BQ9BYG5 372 aa24.1■■□□□ 1.45
CTCF-202ENST00000401394 OLFM4Q6UX06 510 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 OXER1Q8TDS5 423 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 PHLPP2Q6ZVD8 1323 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 NTRK3Q16288 839 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 CCDC102BQ68D86 513 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 TOMM22Q9NS69 142 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 PCDHB6Q9Y5E3 794 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 SH2B2O14492 632 aaPredicted RBP24.09■■□□□ 1.45
CTCF-202ENST00000401394 NRDCO43847 1150 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 CASQ1P31415 396 aa24.09■■□□□ 1.45
CTCF-202ENST00000401394 PPP2R3AQ06190 1150 aa24.08■■□□□ 1.45
CTCF-202ENST00000401394 TRDNQ13061 729 aa24.08■■□□□ 1.45
CTCF-202ENST00000401394 CC2D1AQ6P1N0 951 aaPredicted RBP24.08■■□□□ 1.45
CTCF-202ENST00000401394 TIGD1Q96MW7 591 aa24.08■■□□□ 1.45
CTCF-202ENST00000401394 ARFGEF2Q9Y6D5 1785 aa24.08■■□□□ 1.45
CTCF-202ENST00000401394 PRKAB2O43741 272 aa24.08■■□□□ 1.44
CTCF-202ENST00000401394 IARSP41252 1262 aaKnown RBP24.08■■□□□ 1.44
CTCF-202ENST00000401394 LRRFIP1Q32MZ4 808 aaKnown RBP24.08■■□□□ 1.44
CTCF-202ENST00000401394 PROSER2Q86WR7 435 aaPredicted RBP24.08■■□□□ 1.44
CTCF-202ENST00000401394 GPR108Q9NPR9 543 aa24.08■■□□□ 1.44
CTCF-202ENST00000401394 ZMYM6O95789 1325 aa24.08■■□□□ 1.44
CTCF-202ENST00000401394 GOLGA8AA7E2F4 631 aa24.07■■□□□ 1.44
CTCF-202ENST00000401394 METTL24Q5JXM2 366 aa24.07■■□□□ 1.44
CTCF-202ENST00000401394 ZNF532Q9HCE3 1301 aa24.07■■□□□ 1.44
CTCF-202ENST00000401394 AFMP43652 599 aa24.07■■□□□ 1.44
CTCF-202ENST00000401394 MDM2Q00987 491 aaPredicted RBP24.07■■□□□ 1.44
CTCF-202ENST00000401394 C19orf44Q9H6X5 657 aa24.07■■□□□ 1.44
CTCF-202ENST00000401394 GREM2Q9H772 168 aa24.07■■□□□ 1.44
CTCF-202ENST00000401394 PHKA1P46020 1223 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 TMEM67Q5HYA8 995 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 ZSWIM5Q9P217 1185 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 H3BQF6 201 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 ZBTB43O43298 467 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 CREBRFQ8IUR6 639 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 IGDCC4Q8TDY8 1250 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 CCDC12Q8WUD4 166 aaPredicted RBP24.06■■□□□ 1.44
CTCF-202ENST00000401394 KIFC2Q96AC6 838 aa24.06■■□□□ 1.44
CTCF-202ENST00000401394 SMC1AQ14683 1233 aaKnown RBP24.05■■□□□ 1.44
CTCF-202ENST00000401394 NOM1Q5C9Z4 860 aaKnown RBP24.05■■□□□ 1.44
CTCF-202ENST00000401394 LDHAL6AQ6ZMR3 332 aa24.05■■□□□ 1.44
CTCF-202ENST00000401394 FBXL16Q8N461 479 aa24.05■■□□□ 1.44
CTCF-202ENST00000401394 CCDC191Q8NCU4 936 aa24.05■■□□□ 1.44
CTCF-202ENST00000401394 LY9Q9HBG7 655 aa24.05■■□□□ 1.44
CTCF-202ENST00000401394 CCDC66A2RUB6 948 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 EFCAB8A8MWE9 144 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 WNT7AO00755 349 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 CDC25AP30304 524 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 MAP3K9P80192 1104 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 A0A087X0B3 334 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 ARHGAP6O43182 974 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 HLFQ16534 295 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 RAD9BQ6WBX8 426 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 DIS3L2Q8IYB7 885 aaKnown RBP24.04■■□□□ 1.44
CTCF-202ENST00000401394 MRFAP1Q9Y605 127 aa24.04■■□□□ 1.44
CTCF-202ENST00000401394 CPDO75976 1380 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 N4BP1O75113 896 aaKnown RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 TBX2Q13207 712 aaPredicted RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 POSTNQ15063 836 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 CHMP4CQ96CF2 233 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 ADD2P35612 726 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 EPB41L4AQ9HCS5 686 aaPredicted RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 ARGLU1Q9NWB6 273 aaPredicted RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 LCMT1Q9UIC8 334 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 IFIT3O14879 490 aaKnown RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 PPP6R2O75170 966 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 CD44P16070 742 aaKnown RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 IFIT5Q13325 482 aaKnown RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 MCM6Q14566 821 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 EARS2Q5JPH6 523 aaKnown RBP24.03■■□□□ 1.44
CTCF-202ENST00000401394 NUP133Q8WUM0 1156 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 EPSTI1Q96J88 318 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 ARMT1Q9H993 441 aa24.03■■□□□ 1.44
CTCF-202ENST00000401394 SLIT3O75094 1523 aa24.02■■□□□ 1.44
CTCF-202ENST00000401394 CBFA2T2O43439 604 aa24.02■■□□□ 1.44
CTCF-202ENST00000401394 SHISA4Q96DD7 197 aa24.02■■□□□ 1.44
CTCF-202ENST00000401394 KCNJ6P48051 423 aa24.02■■□□□ 1.44
CTCF-202ENST00000401394 SPECC1LQ69YQ0 1117 aa24.02■■□□□ 1.44
CTCF-202ENST00000401394 KRI1Q8N9T8 703 aaKnown RBP24.02■■□□□ 1.44
CTCF-202ENST00000401394 SCN11AQ9UI33 1791 aa24.02■■□□□ 1.43
CTCF-202ENST00000401394 CIAO1O76071 339 aa24.01■■□□□ 1.43
CTCF-202ENST00000401394 TRIM29Q14134 588 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms