RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 MAST3O60307 1309 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 SGSM2O43147 1006 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 HSPD1P10809 573 aaKnown RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 CRKP46108 304 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 SH3RF3Q8TEJ3 882 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 SMCR8Q8TEV9 937 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 CRAMP1Q96RY5 1269 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 PKD2L1Q9P0L9 805 aa11.97□□□□□ -0.49
COL6A3-205ENST00000392004 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-205ENST00000392004 ZNF142P52746 1687 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-205ENST00000392004 M0R2C6 588 aa11.96□□□□□ -0.49
COL6A3-205ENST00000392004 BAG4O95429 457 aaKnown RBP11.96□□□□□ -0.49
COL6A3-205ENST00000392004 GMPSP49915 693 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-205ENST00000392004 CSPP1Q1MSJ5 1256 aa11.96□□□□□ -0.49
COL6A3-205ENST00000392004 KRT26Q7Z3Y9 468 aa11.96□□□□□ -0.49
COL6A3-205ENST00000392004 ZNRF3Q9ULT6 936 aa11.96□□□□□ -0.49
COL6A3-205ENST00000392004 ONECUT3O60422 494 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-205ENST00000392004 CSF1RP07333 972 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 GNAT2P19087 354 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 USH1GQ495M9 461 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 TMC4Q7Z404 712 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 FCHSD1Q86WN1 690 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 ANGEL1Q9UNK9 670 aaKnown RBP11.96□□□□□ -0.5
COL6A3-205ENST00000392004 ADGRB2O60241 1585 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 KIF20BQ96Q89 1820 aa11.96□□□□□ -0.5
COL6A3-205ENST00000392004 DDIT3P35638 169 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 STK38Q15208 465 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 LTBP4Q8N2S1 1624 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 KRT23Q9C075 422 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 GADL1Q6ZQY3 521 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 C8orf76Q96K31 380 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 BEGAINQ9BUH8 593 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 LIMCH1Q9UPQ0 1083 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 MYOM1P52179 1685 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 SLC27A2O14975 620 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 SLC1A4P43007 532 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 ME1P48163 572 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 TERF1P54274 439 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 TNFAIP1Q13829 316 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 OTUD7BQ6GQQ9 843 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 KIFC2Q96AC6 838 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 FZD1Q9UP38 647 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 FRMPD2Q68DX3 1309 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-205ENST00000392004 RABL6Q3YEC7 729 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-205ENST00000392004 CERKLQ49MI3 558 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-205ENST00000392004 HELLSQ9NRZ9 838 aa11.95□□□□□ -0.5
COL6A3-205ENST00000392004 AK2P54819 239 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 PPARAQ07869 468 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 RTN1Q16799 776 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 MTERF4Q7Z6M4 381 aaKnown RBP11.94□□□□□ -0.5
COL6A3-205ENST00000392004 UBA5Q9GZZ9 404 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 ATP6V1DQ9Y5K8 247 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 GRIN3BO60391 1043 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 CDK11BP21127 795 aaKnown RBP11.94□□□□□ -0.5
COL6A3-205ENST00000392004 HS1BP3Q53T59 392 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 CCDC174Q6PII3 467 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 ARID3AQ99856 593 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 RGS12O14924 1447 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 PRPF40AO75400 957 aaKnown RBP11.94□□□□□ -0.5
COL6A3-205ENST00000392004 DNTTIP2Q5QJE6 756 aaKnown RBP11.94□□□□□ -0.5
COL6A3-205ENST00000392004 ANGEL2Q5VTE6 544 aaKnown RBP11.94□□□□□ -0.5
COL6A3-205ENST00000392004 NSMFQ6X4W1 530 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 USP48Q86UV5 1035 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 PHKBQ93100 1093 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 FBXO3Q9UK99 471 aa11.94□□□□□ -0.5
COL6A3-205ENST00000392004 UQCRHLA0A096LP55 91 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 PATL2C9JE40 543 aaKnown RBP11.93□□□□□ -0.5
COL6A3-205ENST00000392004 UQCRHP07919 91 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 MAP1SQ66K74 1059 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-205ENST00000392004 CLEC10AQ8IUN9 316 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 GPHNQ9NQX3 736 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-205ENST00000392004 SORBS3O60504 671 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 CXCL9Q07325 125 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 SSRP1Q08945 709 aaKnown RBP11.93□□□□□ -0.5
COL6A3-205ENST00000392004 SDF4Q9BRK5 362 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 GGA3Q9NZ52 723 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 CCDC196A0A1B0GTZ2 297 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 HMGB1P09429 215 aaKnown RBP11.93□□□□□ -0.5
COL6A3-205ENST00000392004 USP26Q9BXU7 913 aa11.93□□□□□ -0.5
COL6A3-205ENST00000392004 CDKL5O76039 1030 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 ADD2P35612 726 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 MTX1Q13505 466 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 TMEM132AQ24JP5 1023 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 DRC7Q8IY82 874 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 CPVLQ9H3G5 476 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 KIF5BP33176 963 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 RFX5P48382 616 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-205ENST00000392004 KIF4BQ2VIQ3 1234 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 RASEFQ8IZ41 740 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 PI4K2BQ8TCG2 481 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 VTI1AQ96AJ9 217 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 TMX3Q96JJ7 454 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 CNNM2Q9H8M5 875 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 ATRNO75882 1429 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 LMNB1P20700 586 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 PDCP20941 246 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 DHX32Q7L7V1 743 aaKnown RBP11.92□□□□□ -0.5
COL6A3-205ENST00000392004 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 TMOD4Q9NZQ9 345 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 CCDC39Q9UFE4 941 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms