RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 PDIA6Q15084 440 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 PDILTQ8N807 584 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 KCNG4Q8TDN1 519 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 ACBD3Q9H3P7 528 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 TUBE1Q9UJT0 475 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 NCAPD2Q15021 1401 aa16.75■□□□□ 0.27
VPS9D1-201ENST00000389386 RNF40O75150 1001 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 MNAT1P51948 309 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 KCNV1Q6PIU1 500 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 AFAP1L1Q8TED9 768 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 EAF2Q96CJ1 260 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 FANCLQ9NW38 375 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 SALL1Q9NSC2 1324 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 PRPF6O94906 941 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 RHOXF2BP0C7M4 288 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 AARSP49588 968 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 LIG3P49916 1009 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 ADKP55263 362 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 KLHDC4Q8TBB5 520 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 CLIC6Q96NY7 704 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 RHOXF2Q9BQY4 288 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 BOLA2Q9H3K6 86 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 WDR17Q8IZU2 1322 aa16.74■□□□□ 0.27
VPS9D1-201ENST00000389386 SYF2O95926 243 aaKnown RBP16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 TUBB2AQ13885 445 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 RIC3Q7Z5B4 369 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 RPAINQ86UA6 219 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 TUBB2BQ9BVA1 445 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 COL15A1P39059 1388 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 SPTLC2O15270 562 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 YEATS4O95619 227 aa16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 CCDC8Q9H0W5 538 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-201ENST00000389386 ABCA3Q99758 1704 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 TUBBP07437 444 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 PFKFB1P16118 471 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 CCT2P78371 535 aaKnown RBP16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 COPS6Q7L5N1 327 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 XAGE3Q8WTP9 111 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 SUCLG2Q96I99 432 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 POLR3EQ9NVU0 708 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 HEG1Q9ULI3 1381 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 PPFIA3O75145 1194 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 CYP21A2P08686 494 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 CMA1P23946 247 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 MTF1Q14872 753 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 IFNL2Q8IZJ0 200 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 CNKSR2Q8WXI2 1034 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 VIPAS39Q9H9C1 493 aa16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 DDX21Q9NR30 783 aaKnown RBP eCLIP16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 COL5A2P05997 1499 aaPredicted RBP16.72■□□□□ 0.27
VPS9D1-201ENST00000389386 CCDC175P0C221 793 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 SKIDA1Q1XH10 827 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 NCOA5Q9HCD5 579 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 LZTFL1Q9NQ48 299 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 SASH1O94885 1247 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 FBXW10Q5XX13 1052 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 SPECC1LQ69YQ0 1117 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 KAZALD1Q96I82 304 aa16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 TLR7Q9NYK1 1049 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-201ENST00000389386 SHOX2O60902 331 aaPredicted RBP16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 IGKV5-2P06315 115 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 USP8P40818 1118 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 FAM169AQ9Y6X4 670 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 U3KPZ7 1027 aaPredicted RBP16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 PHLPP1O60346 1717 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 KIF5CO60282 957 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 TTLL5Q6EMB2 1281 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 STOX1Q6ZVD7 989 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 MYD88Q99836 296 aa16.7■□□□□ 0.26
VPS9D1-201ENST00000389386 GRM8O00222 908 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 TFRCP02786 760 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 DHX32Q7L7V1 743 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 TTC5Q8N0Z6 440 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 CTCFLQ8NI51 663 aaPredicted RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 ADGRG1Q9Y653 693 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 CARMIL3Q8ND23 1372 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 CDHR2Q9BYE9 1310 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 A0A0U1RQJ8 604 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 FDPSP14324 419 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 KIF4BQ2VIQ3 1234 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 WDR93Q6P2C0 686 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 TMED8Q6PL24 325 aaPredicted RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 ATRIPQ8WXE1 791 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 KAT6BQ8WYB5 2073 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 ATP5J2-PTCD1G3V325 749 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 PTCD1O75127 700 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 POLR3DP05423 398 aaPredicted RBP16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 CCT5P48643 541 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 IGSF22Q8N9C0 903 aa16.69■□□□□ 0.26
VPS9D1-201ENST00000389386 AHDC1Q5TGY3 1603 aaPredicted RBP16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CTAGE15A4D2H0 777 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CTAGE8P0CG41 777 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CABP4P57796 275 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 ZNF569Q5MCW4 686 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 OLFM4Q6UX06 510 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CTAGE6Q86UF2 777 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CTAGE4Q8IX94 777 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 LINS1Q8NG48 757 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms