RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 RPS6KB1P23443 525 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 AK2P54819 239 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 NIM1KQ8IY84 436 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 NBPF3Q9H094 633 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 GPR75-ASB3A0A0A6YYF3 556 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 MINDY4BA8MYZ0 360 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 PRPF40AO75400 957 aaKnown RBP14.65□□□□□ -0.06
CIITA-202ENST00000381835 TPM2P07951 284 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 USP5P45974 858 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 CTDSPL2Q05D32 466 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 TBC1D10CQ8IV04 446 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 STK11IPQ8N1F8 1099 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 FAM163AQ96GL9 167 aaPredicted RBP14.65□□□□□ -0.06
CIITA-202ENST00000381835 DAGLAQ9Y4D2 1042 aa14.65□□□□□ -0.06
CIITA-202ENST00000381835 GAKO14976 1311 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 PSME4Q14997 1843 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 MCM2P49736 904 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 PPP4CP60510 307 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 RASSF7Q02833 373 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 DCP1AQ9NPI6 582 aaPredicted RBP14.64□□□□□ -0.07
CIITA-202ENST00000381835 ADAMTSL1Q8N6G6 1762 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 FKBP1AP62942 108 aaKnown RBP14.64□□□□□ -0.07
CIITA-202ENST00000381835 TGFBRAP1Q8WUH2 860 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 JDP2Q8WYK2 163 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 CDK5RAP2Q96SN8 1893 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 LRRC2Q9BYS8 371 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 ATP8A2Q9NTI2 1148 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 ZNRF3Q9ULT6 936 aa14.64□□□□□ -0.07
CIITA-202ENST00000381835 CYP2D7A0A087X1C5 515 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 HMGB1P09429 215 aaKnown RBP14.63□□□□□ -0.07
CIITA-202ENST00000381835 GIMAP6Q6P9H5 292 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 CHST3Q7LGC8 479 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 RALYLQ86SE5 291 aaKnown RBP14.63□□□□□ -0.07
CIITA-202ENST00000381835 TEKT1Q969V4 418 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 INCENPQ9NQS7 918 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 USP17L12C9JPN9 530 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 USP17L21D6R901 530 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 SMIM22K7EJ46 135 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 PSMD14O00487 310 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 RBM5P52756 815 aaKnown RBP eCLIP14.63□□□□□ -0.07
CIITA-202ENST00000381835 PPARAQ07869 468 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 TRDNQ13061 729 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 SLC4A8Q2Y0W8 1093 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 DHX32Q7L7V1 743 aaKnown RBP14.63□□□□□ -0.07
CIITA-202ENST00000381835 TEX11Q8IYF3 940 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 NCOA7Q8NI08 942 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 TMX3Q96JJ7 454 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 SYT17Q9BSW7 474 aa14.63□□□□□ -0.07
CIITA-202ENST00000381835 PLCG2P16885 1265 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 CRKP46108 304 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 FGD1P98174 961 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 CTR9Q6PD62 1173 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 CERS3Q8IU89 383 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 RBSNQ9H1K0 784 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 MCM9Q9NXL9 1143 aa14.62□□□□□ -0.07
CIITA-202ENST00000381835 RHBDL3P58872 404 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 HHIPL2Q6UWX4 724 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 Q6ZUG5 572 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 MAPKAPK5Q8IW41 473 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 TOMM22Q9NS69 142 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 LIMCH1Q9UPQ0 1083 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 ZDHHC9Q9Y397 364 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 USP17L8P0C7I0 530 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 EVX2Q03828 476 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 AKNAD1Q5T1N1 836 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 RSBN1LQ6PCB5 846 aaPredicted RBP14.61□□□□□ -0.07
CIITA-202ENST00000381835 MFSD6Q6ZSS7 791 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 GPT2Q8TD30 523 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 ZBTB12Q9Y330 459 aaPredicted RBP14.61□□□□□ -0.07
CIITA-202ENST00000381835 PCDHAC2Q9Y5I4 1007 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 NEDD4P46934 1319 aa14.61□□□□□ -0.07
CIITA-202ENST00000381835 B4E1Z4 1266 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 VIL1P09327 827 aaKnown RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 CXCL9Q07325 125 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 TOB2Q14106 344 aaPredicted RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 RRP12Q5JTH9 1297 aaKnown RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 ARHGAP27Q6ZUM4 889 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 RBM27Q9P2N5 1060 aaKnown RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 TACC3Q9Y6A5 838 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 NAV1Q8NEY1 1877 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 LTBP3Q9NS15 1303 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 OFD1O75665 1012 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 CYP2D6P10635 497 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 MCM5P33992 734 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 EXOSC10Q01780 885 aaKnown RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 HS1BP3Q53T59 392 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 MB21D2Q8IYB1 491 aaPredicted RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 NKX2-3Q8TAU0 364 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 USP40Q9NVE5 1235 aa14.6□□□□□ -0.07
CIITA-202ENST00000381835 ARPP21Q9UBL0 812 aaPredicted RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 MKRN1Q9UHC7 482 aaKnown RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 SAP30BPQ9UHR5 308 aaKnown RBP14.6□□□□□ -0.07
CIITA-202ENST00000381835 PRELPP51888 382 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 ANKRD1Q15327 319 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 APOBEC3HQ6NTF7 200 aaKnown RBP14.59□□□□□ -0.07
CIITA-202ENST00000381835 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.59□□□□□ -0.07
CIITA-202ENST00000381835 STAG1Q8WVM7 1258 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 MYO3BQ8WXR4 1341 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 LAMB1P07942 1786 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 MYH1P12882 1939 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms