RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 USP17L21D6R901 530 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 LARGE1O95461 756 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 MCM5P33992 734 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 ANTXR2P58335 489 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 CNNM2Q9H8M5 875 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 FOXD4L1Q9NU39 408 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 ZNRF3Q9ULT6 936 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 MYO3BQ8WXR4 1341 aa28.25■■■□□ 2.11
SNX3-203ENST00000368979 CRKP46108 304 aa28.24■■■□□ 2.11
SNX3-203ENST00000368979 MFSD6Q6ZSS7 791 aa28.24■■■□□ 2.11
SNX3-203ENST00000368979 TEX11Q8IYF3 940 aa28.24■■■□□ 2.11
SNX3-203ENST00000368979 LRRC2Q9BYS8 371 aa28.24■■■□□ 2.11
SNX3-203ENST00000368979 FHDC1Q9C0D6 1143 aaPredicted RBP28.24■■■□□ 2.11
SNX3-203ENST00000368979 RNF41Q9H4P4 317 aaPredicted RBP28.24■■■□□ 2.11
SNX3-203ENST00000368979 SH2B1Q9NRF2 756 aaPredicted RBP28.24■■■□□ 2.11
SNX3-203ENST00000368979 CYP2D7A0A087X1C5 515 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 NKX2-3Q8TAU0 364 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 TGFBRAP1Q8WUH2 860 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 INTS4Q96HW7 963 aaKnown RBP28.23■■■□□ 2.11
SNX3-203ENST00000368979 ZDHHC15Q96MV8 337 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 B4E1Z4 1266 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 PRC1O43663 620 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 VIL1P09327 827 aaKnown RBP28.23■■■□□ 2.11
SNX3-203ENST00000368979 ME3Q16798 604 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 RSBN1LQ6PCB5 846 aaPredicted RBP28.23■■■□□ 2.11
SNX3-203ENST00000368979 CHST3Q7LGC8 479 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 KRT23Q9C075 422 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 INCENPQ9NQS7 918 aa28.23■■■□□ 2.11
SNX3-203ENST00000368979 SMIM22K7EJ46 135 aa28.22■■■□□ 2.11
SNX3-203ENST00000368979 PSMD14O00487 310 aa28.22■■■□□ 2.11
SNX3-203ENST00000368979 FGRP09769 529 aa28.22■■■□□ 2.11
SNX3-203ENST00000368979 APOBEC3HQ6NTF7 200 aaKnown RBP28.22■■■□□ 2.11
SNX3-203ENST00000368979 MCM9Q9NXL9 1143 aa28.22■■■□□ 2.11
SNX3-203ENST00000368979 ECM29Q5VYK3 1845 aa28.21■■■□□ 2.11
SNX3-203ENST00000368979 RAD17O75943 681 aa28.21■■■□□ 2.11
SNX3-203ENST00000368979 PCP11498 1178 aaKnown RBP28.21■■■□□ 2.11
SNX3-203ENST00000368979 CYB5R4Q7L1T6 521 aa28.21■■■□□ 2.11
SNX3-203ENST00000368979 BRF1Q92994 677 aa28.21■■■□□ 2.11
SNX3-203ENST00000368979 SERPINA10Q9UK55 444 aa28.21■■■□□ 2.11
SNX3-203ENST00000368979 FLT1P17948 1338 aa28.21■■■□□ 2.11
SNX3-203ENST00000368979 ROBO3Q96MS0 1386 aa28.2■■■□□ 2.11
SNX3-203ENST00000368979 USP17L8P0C7I0 530 aa28.2■■■□□ 2.1
SNX3-203ENST00000368979 CYP2D6P10635 497 aa28.2■■■□□ 2.1
SNX3-203ENST00000368979 FGD1P98174 961 aa28.2■■■□□ 2.1
SNX3-203ENST00000368979 MAPKAPK5Q8IW41 473 aa28.2■■■□□ 2.1
SNX3-203ENST00000368979 GMLQ99445 158 aa28.2■■■□□ 2.1
SNX3-203ENST00000368979 RASSF7Q02833 373 aa28.19■■■□□ 2.1
SNX3-203ENST00000368979 ST3GAL1Q11201 340 aa28.19■■■□□ 2.1
SNX3-203ENST00000368979 C12orf60Q5U649 245 aa28.19■■■□□ 2.1
SNX3-203ENST00000368979 JDP2Q8WYK2 163 aa28.19■■■□□ 2.1
SNX3-203ENST00000368979 EVX2Q03828 476 aa28.18■■■□□ 2.1
SNX3-203ENST00000368979 CWC22Q9HCG8 908 aaKnown RBP28.18■■■□□ 2.1
SNX3-203ENST00000368979 CIZ1Q9ULV3 898 aaPredicted RBP28.18■■■□□ 2.1
SNX3-203ENST00000368979 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.18■■■□□ 2.1
SNX3-203ENST00000368979 KDM4AO75164 1064 aa28.18■■■□□ 2.1
SNX3-203ENST00000368979 CDC42EP5Q6NZY7 148 aa28.18■■■□□ 2.1
SNX3-203ENST00000368979 CHMP5Q9NZZ3 219 aa28.18■■■□□ 2.1
SNX3-203ENST00000368979 WDHD1O75717 1129 aaPredicted RBP28.17■■■□□ 2.1
SNX3-203ENST00000368979 PRELPP51888 382 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 EVCP57679 992 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 CXCL9Q07325 125 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 STK11IPQ8N1F8 1099 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 TMEM87BQ96K49 555 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 USP40Q9NVE5 1235 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 ZSWIM5Q9P217 1185 aa28.17■■■□□ 2.1
SNX3-203ENST00000368979 SLC3A2P08195 630 aaKnown RBP28.16■■■□□ 2.1
SNX3-203ENST00000368979 APOBRQ0VD83 1088 aa28.16■■■□□ 2.1
SNX3-203ENST00000368979 RRP12Q5JTH9 1297 aaKnown RBP28.16■■■□□ 2.1
SNX3-203ENST00000368979 AMOTL1Q8IY63 956 aa28.16■■■□□ 2.1
SNX3-203ENST00000368979 GPHNQ9NQX3 736 aaPredicted RBP28.16■■■□□ 2.1
SNX3-203ENST00000368979 MYH1P12882 1939 aa28.16■■■□□ 2.1
SNX3-203ENST00000368979 SH2B2O14492 632 aaPredicted RBP28.15■■■□□ 2.1
SNX3-203ENST00000368979 ORC4O43929 436 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 CCDC83Q8IWF9 413 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 AGBL3Q8NEM8 1001 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 SYT17Q9BSW7 474 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 MTA3Q9BTC8 594 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 TOMM22Q9NS69 142 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 PCDHAC2Q9Y5I4 1007 aa28.15■■■□□ 2.1
SNX3-203ENST00000368979 CIAPIN1Q6FI81 312 aa28.14■■■□□ 2.1
SNX3-203ENST00000368979 ESR2Q92731 530 aa28.14■■■□□ 2.1
SNX3-203ENST00000368979 SAP30BPQ9UHR5 308 aaKnown RBP28.14■■■□□ 2.1
SNX3-203ENST00000368979 NECAB1Q8N987 351 aa28.13■■■□□ 2.09
SNX3-203ENST00000368979 IGDCC4Q8TDY8 1250 aa28.13■■■□□ 2.09
SNX3-203ENST00000368979 DDX4Q9NQI0 724 aaKnown RBP28.13■■■□□ 2.09
SNX3-203ENST00000368979 ANGEL1Q9UNK9 670 aaKnown RBP28.13■■■□□ 2.09
SNX3-203ENST00000368979 ZBTB12Q9Y330 459 aaPredicted RBP28.13■■■□□ 2.09
SNX3-203ENST00000368979 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.13■■■□□ 2.09
SNX3-203ENST00000368979 POLR3DP05423 398 aaPredicted RBP28.13■■■□□ 2.09
SNX3-203ENST00000368979 RBM5P52756 815 aaKnown RBP eCLIP28.13■■■□□ 2.09
SNX3-203ENST00000368979 CFAP100Q494V2 611 aa28.13■■■□□ 2.09
SNX3-203ENST00000368979 GTF3C6Q969F1 213 aa28.13■■■□□ 2.09
SNX3-203ENST00000368979 ZNF274Q96GC6 653 aaPredicted RBP28.13■■■□□ 2.09
SNX3-203ENST00000368979 PFKFB2O60825 505 aa28.12■■■□□ 2.09
SNX3-203ENST00000368979 PLCD1P51178 756 aa28.12■■■□□ 2.09
SNX3-203ENST00000368979 PDE4BQ07343 736 aa28.12■■■□□ 2.09
SNX3-203ENST00000368979 SLC4A8Q2Y0W8 1093 aa28.12■■■□□ 2.09
SNX3-203ENST00000368979 HDAC9Q9UKV0 1011 aa28.12■■■□□ 2.09
SNX3-203ENST00000368979 NT5C2P49902 561 aa28.11■■■□□ 2.09
SNX3-203ENST00000368979 PICALMQ13492 652 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms