RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SHC4Q6S5L8 630 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 FBXW7Q969H0 707 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 AIFM3Q96NN9 605 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 EPB41L4AQ9HCS5 686 aaPredicted RBP16.49■□□□□ 0.23
CD48-201ENST00000368045 RTL9Q8NET4 1388 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.49■□□□□ 0.23
CD48-201ENST00000368045 ITGB4P16144 1822 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 MBD4O95243 580 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 SFPQP23246 707 aaKnown RBP eCLIP16.49■□□□□ 0.23
CD48-201ENST00000368045 SART3Q15020 963 aaKnown RBP16.49■□□□□ 0.23
CD48-201ENST00000368045 SAFBQ15424 915 aaKnown RBP eCLIP16.49■□□□□ 0.23
CD48-201ENST00000368045 TMTC2Q8N394 836 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 KIF18AQ8NI77 898 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 STAG1Q8WVM7 1258 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 PHKBQ93100 1093 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 BTG4Q9NY30 223 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 HOOK1Q9UJC3 728 aaKnown RBP16.49■□□□□ 0.23
CD48-201ENST00000368045 DENND2AQ9ULE3 1009 aa16.49■□□□□ 0.23
CD48-201ENST00000368045 USP27XA6NNY8 438 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 BIN1O00499 593 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 CCP110O43303 1012 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 FANCCQ00597 558 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 MYL5Q02045 173 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 RASGRF1Q13972 1273 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 TMC6Q7Z403 805 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 NOSTRINQ8IVI9 506 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 MAGEB6Q8N7X4 407 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 ZSWIM5Q9P217 1185 aa16.48■□□□□ 0.23
CD48-201ENST00000368045 CCDC196A0A1B0GTZ2 297 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 PARP10Q53GL7 1025 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 MFSD6Q6ZSS7 791 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 TRIM22Q8IYM9 498 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 KRI1Q8N9T8 703 aaKnown RBP16.47■□□□□ 0.23
CD48-201ENST00000368045 NKX2-3Q8TAU0 364 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 SLC26A6Q9BXS9 759 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 RNF41Q9H4P4 317 aaPredicted RBP16.47■□□□□ 0.23
CD48-201ENST00000368045 SENP2Q9HC62 589 aa16.47■□□□□ 0.23
CD48-201ENST00000368045 GSG1L2A8MUP6 293 aa16.46■□□□□ 0.23
CD48-201ENST00000368045 ARMCX5Q6P1M9 558 aa16.46■□□□□ 0.23
CD48-201ENST00000368045 OLFM4Q6UX06 510 aa16.46■□□□□ 0.23
CD48-201ENST00000368045 KRBA2Q6ZNG9 492 aa16.46■□□□□ 0.23
CD48-201ENST00000368045 MPHOSPH8Q99549 860 aa16.46■□□□□ 0.23
CD48-201ENST00000368045 FOXP1Q9H334 677 aaPredicted RBP16.46■□□□□ 0.23
CD48-201ENST00000368045 MORC2Q9Y6X9 1032 aaPredicted RBP16.46■□□□□ 0.23
CD48-201ENST00000368045 PLCH1Q4KWH8 1693 aa16.46■□□□□ 0.23
CD48-201ENST00000368045 EXOC5O00471 708 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 MMP1P03956 469 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 RXRAP19793 462 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 EIF5P55010 431 aaKnown RBP16.46■□□□□ 0.22
CD48-201ENST00000368045 PPP2R5BQ15173 497 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 RTN1Q16799 776 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 ZNF592Q92610 1267 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 ERO1AQ96HE7 468 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 UTP14AQ9BVJ6 771 aaKnown RBP16.46■□□□□ 0.22
CD48-201ENST00000368045 KCNH3Q9ULD8 1083 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 DOCK2Q92608 1830 aa16.46■□□□□ 0.22
CD48-201ENST00000368045 COL14A1Q05707 1796 aaKnown RBP16.45■□□□□ 0.22
CD48-201ENST00000368045 NUP98P52948 1817 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 ERICH2A1L162 156 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 CTDSPL2Q05D32 466 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 WTAPQ15007 396 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 CCDC152Q4G0S7 254 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 RILPL1Q5EBL4 403 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 ZNF579Q8NAF0 562 aaKnown RBP16.45■□□□□ 0.22
CD48-201ENST00000368045 ARMT1Q9H993 441 aa16.45■□□□□ 0.22
CD48-201ENST00000368045 TDO2P48775 406 aa16.44■□□□□ 0.22
CD48-201ENST00000368045 CNNM3Q8NE01 707 aa16.44■□□□□ 0.22
CD48-201ENST00000368045 HELBQ8NG08 1087 aaPredicted RBP16.44■□□□□ 0.22
CD48-201ENST00000368045 ARID3AQ99856 593 aa16.44■□□□□ 0.22
CD48-201ENST00000368045 HSD3B7Q9H2F3 369 aa16.44■□□□□ 0.22
CD48-201ENST00000368045 ZNF335Q9H4Z2 1342 aaPredicted RBP16.44■□□□□ 0.22
CD48-201ENST00000368045 DEXIO95424 95 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 LMOD1P29536 600 aaPredicted RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 IGHMBP2P38935 993 aaKnown RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 SUSD4Q5VX71 490 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 E4F1Q66K89 784 aaPredicted RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 METTL16Q86W50 562 aaKnown RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 PPP1R13BQ96KQ4 1090 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 TRMT1Q9NXH9 659 aaKnown RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 DACH1Q9UI36 760 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 CEP131Q9UPN4 1083 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 SLC4A4Q9Y6R1 1079 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 PTPREP23469 700 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 UBASH3AP57075 661 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 PNOCQ13519 176 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 LONRF3Q496Y0 759 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 UTP14CQ5TAP6 766 aaKnown RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 FCHSD1Q86WN1 690 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 DIS3L2Q8IYB7 885 aaKnown RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 CLIC6Q96NY7 704 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 MYL10Q9BUA6 226 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 CDCA7Q9BWT1 371 aaPredicted RBP16.43■□□□□ 0.22
CD48-201ENST00000368045 CCDC87Q9NVE4 849 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 OGFRQ9NZT2 677 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 ANAPC4Q9UJX5 808 aa16.43■□□□□ 0.22
CD48-201ENST00000368045 SLU7O95391 586 aaKnown RBP16.42■□□□□ 0.22
CD48-201ENST00000368045 SERPINC1P01008 464 aa16.42■□□□□ 0.22
CD48-201ENST00000368045 MDM2Q00987 491 aaPredicted RBP16.42■□□□□ 0.22
CD48-201ENST00000368045 KANK3Q6NY19 840 aa16.42■□□□□ 0.22
CD48-201ENST00000368045 CRACR2BQ8N4Y2 399 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms