RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 ERVV-2B6SEH9 535 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 ARHGAP6O43182 974 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 PPFIA3O75145 1194 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 ITGA6P23229 1130 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 ZNF569Q5MCW4 686 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 CNNM4Q6P4Q7 775 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 CCDC129Q6ZRS4 1044 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 CCDC51Q96ER9 411 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 NCKAP5LQ9HCH0 1330 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 PLEKHG1Q9ULL1 1385 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 LDHBP07195 334 aaKnown RBP10.13□□□□□ -0.79
SYNE1-205ENST00000367251 RPL13P26373 211 aaKnown RBP10.13□□□□□ -0.79
SYNE1-205ENST00000367251 TNNC1P63316 161 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 GABPB1Q06547 395 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-205ENST00000367251 SV2BQ7L1I2 683 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 CHST3Q7LGC8 479 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 CCDC77Q9BR77 488 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 USP44Q9H0E7 712 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 FSD2A1L4K1 749 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 GPAA1O43292 621 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 CPA1P15085 419 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 ADALQ6DHV7 355 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 MCM9Q9NXL9 1143 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 TFCP2L1Q9NZI6 479 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 SH3TC1Q8TE82 1336 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 NEURL1BA8MQ27 555 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 PFKFB2O60825 505 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 PARP1P09874 1014 aaKnown RBP10.13□□□□□ -0.79
SYNE1-205ENST00000367251 TTC6Q86TZ1 520 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 TMTC1Q8IUR5 882 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 ZSWIM4Q9H7M6 989 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 GPR108Q9NPR9 543 aa10.13□□□□□ -0.79
SYNE1-205ENST00000367251 HECW2Q9P2P5 1572 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 ZNF202O95125 648 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 MCM7P33993 719 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 GPR162Q16538 588 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 NAPGQ99747 312 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-205ENST00000367251 MMRN2Q9H8L6 949 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 NOC2LQ9Y3T9 749 aaKnown RBP10.12□□□□□ -0.79
SYNE1-205ENST00000367251 PTCH1Q13635 1447 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 KIF4AO95239 1232 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 ZNF853P0CG23 659 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 VAV2P52735 878 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 PPP2R3AQ06190 1150 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 FCHSD1Q86WN1 690 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 CCDC65Q8IXS2 484 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 SMARCC2Q8TAQ2 1214 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 PRPF4BQ13523 1007 aaKnown RBP10.12□□□□□ -0.79
SYNE1-205ENST00000367251 BEND3Q5T5X7 828 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 LGR6Q9HBX8 967 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 GPHNQ9NQX3 736 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-205ENST00000367251 TMEM63CQ9P1W3 806 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 MAP3K4Q9Y6R4 1608 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 PHACTR2O75167 634 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 DNA2P51530 1060 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 CDC37L1Q7L3B6 337 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 IGSF22Q8N9C0 903 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 PLA2R1Q13018 1463 aa10.12□□□□□ -0.79
SYNE1-205ENST00000367251 F8W031 263 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 CLUL1Q15846 466 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 SPOUT1Q5T280 376 aaKnown RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 TTC14Q96N46 770 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 GJA3Q9Y6H8 435 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 SYNRGQ9UMZ2 1314 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 CROCC2H7BZ55 1655 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 GADD45BO75293 160 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 BRDTQ58F21 947 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 ARHGAP31Q2M1Z3 1444 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 ZCCHC11Q5TAX3 1644 aaKnown RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 SPDYE3A6NKU9 549 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 B4E1Z4 1266 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 E7EWF7 191 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 CDC25BP30305 580 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 GIGYF1O75420 1035 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 MCM6Q14566 821 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 ME3Q16798 604 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 CEP128Q6ZU80 1094 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 TRIML1Q8N9V2 468 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 HAUS7Q99871 368 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 GUCA1BQ9UMX6 200 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 RIOK3O14730 519 aaKnown RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 ZWINTO95229 277 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 EVCP57679 992 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 TIMM10P62072 90 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 HS2ST1Q7LGA3 356 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 NAP1L3Q99457 506 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-205ENST00000367251 EYA3Q99504 573 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 LAMC1P11047 1609 aa10.11□□□□□ -0.79
SYNE1-205ENST00000367251 PAK1Q13153 545 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 KRT40Q6A162 431 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 KRT25Q7Z3Z0 450 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 DIS3L2Q8IYB7 885 aaKnown RBP10.1□□□□□ -0.79
SYNE1-205ENST00000367251 TSKSQ9UJT2 592 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 SLC4A8Q2Y0W8 1093 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 TTC38Q5R3I4 469 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 DPH6Q7L8W6 267 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 MIGA1Q8NAN2 632 aa10.1□□□□□ -0.79
SYNE1-205ENST00000367251 MRFAP1L1Q96HT8 127 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms