RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CFBP00751 764 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 CTDSPL2Q05D32 466 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 LETM2Q2VYF4 491 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 ATL3Q6DD88 541 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 DIS3L2Q8IYB7 885 aaKnown RBP13.12□□□□□ -0.31
SYNE1-204ENST00000367248 GREM2Q9H772 168 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 PREX2Q70Z35 1606 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 ZBED4O75132 1171 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 TEKT1Q969V4 418 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 MRVI1Q9Y6F6 885 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 FAM13AO94988 1023 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 GJC1P36383 396 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 KIF18AQ8NI77 898 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 GLT8D2Q9H1C3 349 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 NCOA5Q9HCD5 579 aaKnown RBP13.12□□□□□ -0.31
SYNE1-204ENST00000367248 PRAMEF22A3QJZ6 481 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 PDE6AP16499 860 aa13.12□□□□□ -0.31
SYNE1-204ENST00000367248 URI1O94763 535 aaPredicted RBP13.12□□□□□ -0.31
SYNE1-204ENST00000367248 PDE8BO95263 885 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 TFAP4Q01664 338 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 PIGBQ92521 554 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 LLPHQ9BRT6 129 aaKnown RBP13.11□□□□□ -0.31
SYNE1-204ENST00000367248 BCAMP50895 628 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 FAM47AQ5JRC9 791 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 CTAGE1Q96RT6 745 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 ARPP21Q9UBL0 812 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-204ENST00000367248 HSPA4P34932 840 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 NOP2P46087 812 aaKnown RBP13.11□□□□□ -0.31
SYNE1-204ENST00000367248 PROCA1Q8NCQ7 364 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-204ENST00000367248 TMCO5BA8MYB1 307 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 DTNBO60941 627 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 HS2ST1Q7LGA3 356 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 KDM6BO15054 1643 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 USP17L12C9JPN9 530 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 USP17L21D6R901 530 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 PAFAH1B1P43034 410 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 ANO6Q4KMQ2 910 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 DNAJC25Q9H1X3 360 aa13.11□□□□□ -0.31
SYNE1-204ENST00000367248 THRAP3Q9Y2W1 955 aaKnown RBP13.11□□□□□ -0.31
SYNE1-204ENST00000367248 GSTTP1A0A1W2PQM5 241 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 PPEF1O14829 653 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-204ENST00000367248 EIF3JO75822 258 aaKnown RBP13.1□□□□□ -0.31
SYNE1-204ENST00000367248 MYL10Q9BUA6 226 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 hCG_1642624A0A1W2PR95 340 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 TNFAIP1Q13829 316 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 ZNF174Q15697 407 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 NCAPG2Q86XI2 1143 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 TRMT2AQ8IZ69 625 aaKnown RBP13.1□□□□□ -0.31
SYNE1-204ENST00000367248 TM6SF1Q9BZW5 370 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 GPR108Q9NPR9 543 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 CYP27B1O15528 508 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 CCDC172P0C7W6 258 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 PPARAQ07869 468 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 PUS3Q9BZE2 481 aaKnown RBP13.1□□□□□ -0.31
SYNE1-204ENST00000367248 TRIM6Q9C030 488 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-204ENST00000367248 CCDC169A6NNP5 214 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 MMP10P09238 476 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 DALRD3Q5D0E6 543 aaKnown RBP13.1□□□□□ -0.31
SYNE1-204ENST00000367248 MAP3K4Q9Y6R4 1608 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 UBASH3AP57075 661 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 ARID5AQ03989 594 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 CERKQ8TCT0 537 aa13.1□□□□□ -0.31
SYNE1-204ENST00000367248 KDM5CP41229 1560 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 ADGRL3Q9HAR2 1447 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 CCDC113Q9H0I3 377 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 TRMT1Q9NXH9 659 aaKnown RBP13.09□□□□□ -0.31
SYNE1-204ENST00000367248 ADGBQ8N7X0 1667 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 CLASP1Q7Z460 1538 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 OTUD7BQ6GQQ9 843 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 ALS2CR12Q96Q35 445 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 ERFEQ4G0M1 354 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 IMPG2Q9BZV3 1241 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 C21orf2O43822 256 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 LUZP1Q86V48 1076 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 GBP3Q9H0R5 595 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 GOPCQ9HD26 462 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 PIK3AP1Q6ZUJ8 805 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 AOPEPQ8N6M6 819 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 HEG1Q9ULI3 1381 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 ZNF804BA4D1E1 1349 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 GOLGA6L9A6NEM1 432 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 HSPA1LP34931 641 aa13.09□□□□□ -0.31
SYNE1-204ENST00000367248 NONOQ15233 471 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNE1-204ENST00000367248 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNE1-204ENST00000367248 VWA3AA6NCI4 1184 aa13.08□□□□□ -0.31
SYNE1-204ENST00000367248 ZNF521Q96K83 1311 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 ERVV-1B6SEH8 477 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 E7EWF7 191 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 GBP2P32456 591 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-204ENST00000367248 TERF1P54274 439 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 TMC4Q7Z404 712 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 A0A0D9SFI3 127 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 CIAO1O76071 339 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 KRT40Q6A162 431 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 GPR101Q96P66 508 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-204ENST00000367248 LZTS2Q9BRK4 669 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 XDHP47989 1333 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 PHKA1P46020 1223 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 PLCD1P51178 756 aa13.08□□□□□ -0.32
SYNE1-204ENST00000367248 HAUS7Q99871 368 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms