RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 FKBP1BP68106 108 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 CCNA1P78396 465 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 CSPP1Q1MSJ5 1256 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 PLEKHM2Q8IWE5 1019 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 DSCC1Q9BVC3 393 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 CACNA1FO60840 1977 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 IFIT3O14879 490 aaKnown RBP10.79□□□□□ -0.68
UPF2-202ENST00000357604 ADD2P35612 726 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 GADL1Q6ZQY3 521 aa10.79□□□□□ -0.68
UPF2-202ENST00000357604 RABEP1Q15276 862 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 ANGEL2Q5VTE6 544 aaKnown RBP10.78□□□□□ -0.68
UPF2-202ENST00000357604 HERC5Q9UII4 1024 aaKnown RBP10.78□□□□□ -0.68
UPF2-202ENST00000357604 MCM5P33992 734 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 IFIT1BQ5T764 474 aaKnown RBP10.78□□□□□ -0.68
UPF2-202ENST00000357604 CCDC102AQ96A19 550 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 MRIQ9BWK5 157 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 RBM27Q9P2N5 1060 aaKnown RBP10.78□□□□□ -0.68
UPF2-202ENST00000357604 ABCB5Q2M3G0 1257 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 PDRG1Q9NUG6 133 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 GPRC5DQ9NZD1 345 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 DDNO94850 711 aaPredicted RBP10.78□□□□□ -0.68
UPF2-202ENST00000357604 SLC4A3P48751 1232 aa10.78□□□□□ -0.68
UPF2-202ENST00000357604 FASTKD5Q7L8L6 764 aaKnown RBP10.78□□□□□ -0.68
UPF2-202ENST00000357604 EPB41L2O43491 1005 aaKnown RBP10.77□□□□□ -0.68
UPF2-202ENST00000357604 BCORQ6W2J9 1755 aa10.77□□□□□ -0.68
UPF2-202ENST00000357604 WTAPQ15007 396 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 TMEM67Q5HYA8 995 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 WDR78Q5VTH9 848 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 SLKQ9H2G2 1235 aaPredicted RBP10.77□□□□□ -0.69
UPF2-202ENST00000357604 RBM28Q9NW13 759 aaKnown RBP10.77□□□□□ -0.69
UPF2-202ENST00000357604 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.77□□□□□ -0.69
UPF2-202ENST00000357604 PITPNM2Q9BZ72 1349 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 RBM46Q8TBY0 533 aaKnown RBP10.77□□□□□ -0.69
UPF2-202ENST00000357604 SMCR8Q8TEV9 937 aaPredicted RBP10.77□□□□□ -0.69
UPF2-202ENST00000357604 FAM151AQ8WW52 585 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 TANGO6Q9C0B7 1094 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 IVNS1ABPQ9Y6Y0 642 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 MCAMP43121 646 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 PPARAQ07869 468 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 ZRSR1Q15695 479 aaKnown RBP10.77□□□□□ -0.69
UPF2-202ENST00000357604 TBC1D9Q6ZT07 1266 aa10.77□□□□□ -0.69
UPF2-202ENST00000357604 HOXD10P28358 340 aa10.76□□□□□ -0.69
UPF2-202ENST00000357604 MAP3K9P80192 1104 aa10.76□□□□□ -0.69
UPF2-202ENST00000357604 OSBPL5Q9H0X9 879 aaPredicted RBP10.76□□□□□ -0.69
UPF2-202ENST00000357604 ZNF157P51786 506 aaPredicted RBP10.76□□□□□ -0.69
UPF2-202ENST00000357604 JAKMIP1Q96N16 626 aaKnown RBP10.76□□□□□ -0.69
UPF2-202ENST00000357604 LZTS2Q9BRK4 669 aa10.76□□□□□ -0.69
UPF2-202ENST00000357604 FGFR2P21802 821 aa10.76□□□□□ -0.69
UPF2-202ENST00000357604 USP17L2Q6R6M4 530 aa10.76□□□□□ -0.69
UPF2-202ENST00000357604 PDGFDQ9GZP0 370 aaPredicted RBP10.76□□□□□ -0.69
UPF2-202ENST00000357604 GBA2Q9HCG7 927 aaPredicted RBP10.76□□□□□ -0.69
UPF2-202ENST00000357604 COPB2P35606 906 aa10.76□□□□□ -0.69
UPF2-202ENST00000357604 ALDH1A1P00352 501 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 SLC4A8Q2Y0W8 1093 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 ZDHHC15Q96MV8 337 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 C22orf23Q9BZE7 217 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 ANKRD36CQ5JPF3 1778 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 PDIA4P13667 645 aaKnown RBP10.75□□□□□ -0.69
UPF2-202ENST00000357604 FKBP1CQ5VVH2 108 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 ESYT1Q9BSJ8 1104 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 TDRD3Q9H7E2 651 aaKnown RBP10.75□□□□□ -0.69
UPF2-202ENST00000357604 PIH1D3Q9NQM4 214 aaKnown RBP10.75□□□□□ -0.69
UPF2-202ENST00000357604 TSHZ3Q63HK5 1081 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 CHURC1Q8WUH1 139 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 CCDC43Q96MW1 224 aaKnown RBP10.75□□□□□ -0.69
UPF2-202ENST00000357604 SPDYE2BA6NHP3 402 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 USP17L5A8MUK1 530 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 ASNSP08243 561 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 PARP1P09874 1014 aaKnown RBP10.75□□□□□ -0.69
UPF2-202ENST00000357604 SPDYE6P0CI01 402 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 SNAPC2Q13487 334 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 OSBPL3Q9H4L5 887 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 DAGLAQ9Y4D2 1042 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 QSER1Q2KHR3 1735 aa10.75□□□□□ -0.69
UPF2-202ENST00000357604 CETPP11597 493 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 GTF2A2P52657 109 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 ZMYM1Q5SVZ6 1142 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 ANKRD13AQ8IZ07 590 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 COL1A1P02452 1464 aaPredicted RBP10.74□□□□□ -0.69
UPF2-202ENST00000357604 IFNL3Q8IZI9 196 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 NEK1Q96PY6 1258 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 ATP6V1DQ9Y5K8 247 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 GOLGA6L4A6NEF3 574 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 FZD9O00144 591 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 YBX3P16989 372 aaKnown RBP eCLIP10.74□□□□□ -0.69
UPF2-202ENST00000357604 APLP1P51693 650 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 SPDYE2Q495Y8 402 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 DACT2Q5SW24 774 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 GLT8D2Q9H1C3 349 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 STX8Q9UNK0 236 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 GOLGA8AA7E2F4 631 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 GOLGA8BA8MQT2 603 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 PLS1Q14651 629 aa10.74□□□□□ -0.69
UPF2-202ENST00000357604 ZBTB12Q9Y330 459 aaPredicted RBP10.74□□□□□ -0.69
UPF2-202ENST00000357604 FAM83AQ86UY5 434 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 RRP36Q96EU6 259 aaKnown RBP10.73□□□□□ -0.69
UPF2-202ENST00000357604 TMEM87BQ96K49 555 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 WRNIP1Q96S55 665 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 ZFYVE28Q9HCC9 887 aa10.73□□□□□ -0.69
UPF2-202ENST00000357604 BIN2Q9UBW5 565 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms