RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CNNM1Q9NRU3 951 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 ZNF213O14771 459 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 C6orf118Q5T5N4 469 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 ZNF280CQ8ND82 737 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 PALMDQ9NP74 551 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 TMPOP42166 694 aaKnown RBP14.01□□□□□ -0.17
COL6A3-203ENST00000353578 ISM2Q6H9L7 571 aa14.01□□□□□ -0.17
COL6A3-203ENST00000353578 TMED1Q13445 227 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 SSH1Q8WYL5 1049 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 HAUS2Q9NVX0 235 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 ORC3Q9UBD5 711 aaPredicted RBP14□□□□□ -0.17
COL6A3-203ENST00000353578 ORC6Q9Y5N6 252 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 CADPSQ9ULU8 1353 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 NUP160Q12769 1436 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 RWDD2BP57060 319 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 NUTM2BA6NNL0 878 aaPredicted RBP14□□□□□ -0.17
COL6A3-203ENST00000353578 NUTM2EB1AL46 878 aaPredicted RBP14□□□□□ -0.17
COL6A3-203ENST00000353578 FAM204AQ9H8W3 233 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 STOML1Q9UBI4 398 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 MAP3K12Q12852 859 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 WWC3Q9ULE0 1092 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 ARHGAP5Q13017 1502 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 PPP1R12AO14974 1030 aaPredicted RBP14□□□□□ -0.17
COL6A3-203ENST00000353578 ARAP1Q96P48 1450 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 ARHGAP42A6NI28 874 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 PSME1Q06323 249 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 SLF2Q8IX21 1173 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 RBSNQ9H1K0 784 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 PUS7Q96PZ0 661 aaKnown RBP14□□□□□ -0.17
COL6A3-203ENST00000353578 IGSF3O75054 1194 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 SLC30A9Q6PML9 568 aa14□□□□□ -0.17
COL6A3-203ENST00000353578 POLR1AO95602 1720 aaPredicted RBP13.99□□□□□ -0.17
COL6A3-203ENST00000353578 DIABLOQ9NR28 239 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 KDM5DQ9BY66 1539 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 STK10O94804 968 aaKnown RBP13.99□□□□□ -0.17
COL6A3-203ENST00000353578 SERPINB10P48595 397 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 TSR2Q969E8 191 aaKnown RBP13.99□□□□□ -0.17
COL6A3-203ENST00000353578 SERPINA10Q9UK55 444 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 FKBP4Q02790 459 aaKnown RBP eCLIP13.99□□□□□ -0.17
COL6A3-203ENST00000353578 SYNJ1O43426 1573 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 TCERG1LQ5VWI1 586 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 NUB1Q9Y5A7 615 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 MRFAP1Q9Y605 127 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 CALM1P0DP23 149 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 CALM2P0DP24 149 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 CALM3P0DP25 149 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 GUCY2CP25092 1073 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 EMBQ6PCB8 327 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 UHRF1BP1Q6BDS2 1440 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 TRIM75PA6NK02 468 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 CHGBP05060 677 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 SLC9C1Q4G0N8 1177 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 CARD6Q9BX69 1037 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 MSH6P52701 1360 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 TXNDC9O14530 226 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 IL9RQ01113 521 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 NAP1L4Q99733 375 aaKnown RBP13.99□□□□□ -0.17
COL6A3-203ENST00000353578 ESYT1Q9BSJ8 1104 aa13.99□□□□□ -0.17
COL6A3-203ENST00000353578 DNM1Q05193 864 aaKnown RBP13.98□□□□□ -0.17
COL6A3-203ENST00000353578 CNNM4Q6P4Q7 775 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 TRIML1Q8N9V2 468 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 HAUS4Q9H6D7 363 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 C10orf88Q9H8K7 445 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 EIF3CLB5ME19 914 aaKnown RBP13.98□□□□□ -0.17
COL6A3-203ENST00000353578 KRT3P12035 628 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 SLC20A2Q08357 652 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 CUL3Q13618 768 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 EIF3CQ99613 913 aaKnown RBP13.98□□□□□ -0.17
COL6A3-203ENST00000353578 ST5P78524 1137 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 ITIH3Q06033 890 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 ESRRBO95718 433 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 IMPG2Q9BZV3 1241 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 ZNF215Q9UL58 517 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-203ENST00000353578 STX10O60499 249 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 TAF11Q15544 211 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 TMCO5AQ8N6Q1 288 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 GDPD2Q9HCC8 539 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 PFDN4Q9NQP4 134 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 HMOX1P09601 288 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 BIRC3Q13489 604 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 CATSPER1Q8NEC5 780 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 PIK3R4Q99570 1358 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 INPP1P49441 399 aa13.98□□□□□ -0.17
COL6A3-203ENST00000353578 ALDH1L1O75891 902 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 RAD51AP2Q09MP3 1159 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 PLCB4Q15147 1175 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 PDE11AQ9HCR9 933 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 SUFUQ9UMX1 484 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 NSD3Q9BZ95 1437 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 MRPS25P82663 173 aaKnown RBP13.97□□□□□ -0.17
COL6A3-203ENST00000353578 LTV1Q96GA3 475 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-203ENST00000353578 TLDC2A0PJX2 215 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 DCTN3O75935 186 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 CCDC93Q567U6 631 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 FNBP4Q8N3X1 1017 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-203ENST00000353578 MRPL40Q9NQ50 206 aaKnown RBP13.97□□□□□ -0.17
COL6A3-203ENST00000353578 C16orf87Q6PH81 154 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 REREQ9P2R6 1566 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 IWS1Q96ST2 819 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 DDX21Q9NR30 783 aaKnown RBP eCLIP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms