RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 WDHD1O75717 1129 aaPredicted RBP25.25■■□□□ 1.63
SHMT1-202ENST00000352886 CMA1P23946 247 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 TRIM29Q14134 588 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 CCDC144BQ3MJ40 725 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 AOPEPQ8N6M6 819 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 STAG1Q8WVM7 1258 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 FAM13BQ9NYF5 915 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 UBE2Q2LH0YL09 131 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 KCNQ2O43526 872 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 PFKFB1P16118 471 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 STK11IPQ8N1F8 1099 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 MRFAP1L1Q96HT8 127 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 CDC5LQ99459 802 aaKnown RBP25.25■■□□□ 1.63
SHMT1-202ENST00000352886 SLC26A6Q9BXS9 759 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 MROH7-TTC4A0A0A0MT08 1334 aa25.25■■□□□ 1.63
SHMT1-202ENST00000352886 COL5A3P25940 1745 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-202ENST00000352886 ZKSCAN3Q9BRR0 538 aa25.24■■□□□ 1.63
SHMT1-202ENST00000352886 TAF1P21675 1872 aa25.24■■□□□ 1.63
SHMT1-202ENST00000352886 NUTM2BA6NNL0 878 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-202ENST00000352886 NUTM2EB1AL46 878 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-202ENST00000352886 ZRSR1Q15695 479 aaKnown RBP25.24■■□□□ 1.63
SHMT1-202ENST00000352886 NUTM2AQ8IVF1 878 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-202ENST00000352886 SSRP1Q08945 709 aaKnown RBP25.23■■□□□ 1.63
SHMT1-202ENST00000352886 SLC3A2P08195 630 aaKnown RBP25.23■■□□□ 1.63
SHMT1-202ENST00000352886 DPCR1Q3MIW9 517 aa25.23■■□□□ 1.63
SHMT1-202ENST00000352886 CACTINQ8WUQ7 758 aaKnown RBP25.23■■□□□ 1.63
SHMT1-202ENST00000352886 ABCF2Q9UG63 623 aa25.23■■□□□ 1.63
SHMT1-202ENST00000352886 STK36Q9NRP7 1315 aa25.23■■□□□ 1.63
SHMT1-202ENST00000352886 CYP7A1P22680 504 aa25.22■■□□□ 1.63
SHMT1-202ENST00000352886 U2AF2P26368 475 aaKnown RBP eCLIP25.22■■□□□ 1.638e-8■■■■■ 27.5
SHMT1-202ENST00000352886 SMARCC1Q92922 1105 aaPredicted RBP25.22■■□□□ 1.63
SHMT1-202ENST00000352886 A0A1B0GUL6 1792 aa25.22■■□□□ 1.63
SHMT1-202ENST00000352886 FMNL1O95466 1100 aaPredicted RBP25.22■■□□□ 1.63
SHMT1-202ENST00000352886 SART3Q15020 963 aaKnown RBP25.22■■□□□ 1.63
SHMT1-202ENST00000352886 ADGRA1Q86SQ6 560 aa25.22■■□□□ 1.63
SHMT1-202ENST00000352886 CASZ1Q86V15 1759 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 PPP6R2O75170 966 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 GYG1P46976 350 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 WTAPQ15007 396 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 PTPAQ15257 358 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 ERFEQ4G0M1 354 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 IFNAR1P17181 557 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 ANKRD18AQ8IVF6 992 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 JMYQ8N9B5 988 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 MAP3K14Q99558 947 aa25.21■■□□□ 1.63
SHMT1-202ENST00000352886 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.21■■□□□ 1.63
SHMT1-202ENST00000352886 NID2Q14112 1375 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 ZNF804BA4D1E1 1349 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 CLEC4GQ6UXB4 293 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 BARGINQ6ZT62 677 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 C3orf67Q6ZVT6 689 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 ERICH2A1L162 156 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 BIN1O00499 593 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 SDR42E1Q8WUS8 393 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 RAI14Q9P0K7 980 aa25.2■■□□□ 1.62
SHMT1-202ENST00000352886 WTIPA6NIX2 430 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-202ENST00000352886 PPARAQ07869 468 aa25.19■■□□□ 1.62
SHMT1-202ENST00000352886 RTN1Q16799 776 aa25.19■■□□□ 1.62
SHMT1-202ENST00000352886 PDCL3Q9H2J4 239 aa25.19■■□□□ 1.62
SHMT1-202ENST00000352886 RNF41Q9H4P4 317 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-202ENST00000352886 GUCY1A2P33402 732 aa25.18■■□□□ 1.62
SHMT1-202ENST00000352886 SYKP43405 635 aa25.18■■□□□ 1.62
SHMT1-202ENST00000352886 SHC4Q6S5L8 630 aa25.18■■□□□ 1.62
SHMT1-202ENST00000352886 WASF1Q92558 559 aa25.18■■□□□ 1.62
SHMT1-202ENST00000352886 LRRC8AQ8IWT6 810 aa25.18■■□□□ 1.62
SHMT1-202ENST00000352886 GNL3LQ9NVN8 582 aaKnown RBP25.18■■□□□ 1.62
SHMT1-202ENST00000352886 RBM6P78332 1123 aaKnown RBP25.17■■□□□ 1.62
SHMT1-202ENST00000352886 LINC00116Q8NCU8 138 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 BPIFA3Q9BQP9 254 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 HPSEQ9Y251 543 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 COL1A1P02452 1464 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-202ENST00000352886 MAGEB6P1A0A0J9YX57 407 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 MINDY4BA8MYZ0 360 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 NLRP12P59046 1061 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 CHAF1AQ13111 956 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-202ENST00000352886 TRIM22Q8IYM9 498 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 TIGD1Q96MW7 591 aa25.17■■□□□ 1.62
SHMT1-202ENST00000352886 GTF2F1P35269 517 aaKnown RBP eCLIP25.16■■□□□ 1.62
SHMT1-202ENST00000352886 ARID5BQ14865 1188 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 SF3B3Q15393 1217 aaKnown RBP25.16■■□□□ 1.62
SHMT1-202ENST00000352886 CCDC82Q8N4S0 544 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 CLIC6Q96NY7 704 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 CACNA1SQ13698 1873 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 KCNQ4P56696 695 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 UBE4AQ14139 1066 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 CMTR1Q8N1G2 835 aaKnown RBP25.16■■□□□ 1.62
SHMT1-202ENST00000352886 TMTC2Q8N394 836 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 MTA3Q9BTC8 594 aa25.16■■□□□ 1.62
SHMT1-202ENST00000352886 BSDC1Q9NW68 430 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-202ENST00000352886 MMP1P03956 469 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 BICDL1Q6ZP65 573 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 FILIP1Q7Z7B0 1213 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 NOSTRINQ8IVI9 506 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 UBAC1Q9BSL1 405 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.15■■□□□ 1.62
SHMT1-202ENST00000352886 BAZ2AQ9UIF9 1905 aaKnown RBP25.15■■□□□ 1.62
SHMT1-202ENST00000352886 BTBD18B2RXH4 712 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 NUP133Q8WUM0 1156 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 KCNJ14Q9UNX9 436 aa25.15■■□□□ 1.62
SHMT1-202ENST00000352886 MYH2Q9UKX2 1941 aa25.14■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms