RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 CLIC4Q9Y696 253 aa21.02■□□□□ 0.96
SMPD1-201ENST00000342245 NRXN3Q9Y4C0 1643 aa21.02■□□□□ 0.96
SMPD1-201ENST00000342245 SARNPP82979 210 aaKnown RBP21.02■□□□□ 0.96
SMPD1-201ENST00000342245 FAM237AA0A1B0GTK4 181 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 NBPF7P0C2Y1 421 aaPredicted RBP21.01■□□□□ 0.95
SMPD1-201ENST00000342245 GGCXP38435 758 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 SLC35F6Q8N357 371 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 BSDC1Q9NW68 430 aaPredicted RBP21.01■□□□□ 0.95
SMPD1-201ENST00000342245 A0A1B0GUA9 196 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 FOSBP53539 338 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 SMTNP53814 917 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 PPFIBP1Q86W92 1011 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 CPS1P31327 1500 aa21.01■□□□□ 0.95
SMPD1-201ENST00000342245 ZNF18P17022 549 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 ZKSCAN8Q15776 578 aaPredicted RBP21■□□□□ 0.95
SMPD1-201ENST00000342245 SKIDA1Q1XH10 827 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 MTHFSDQ2M296 383 aaKnown RBP21■□□□□ 0.95
SMPD1-201ENST00000342245 NUTM2AQ8IVF1 878 aaPredicted RBP21■□□□□ 0.95
SMPD1-201ENST00000342245 MAGEC3Q8TD91 643 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 GGA2Q9UJY4 613 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 AKAP12Q02952 1782 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 OPA1O60313 960 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 ZEB2O60315 1214 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 NEBLO76041 1014 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 DRP2Q13474 957 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 MYSM1Q5VVJ2 828 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 ANO1Q5XXA6 986 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 IQCA1Q86XH1 822 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 ANKRD18AQ8IVF6 992 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 ENOX1Q8TC92 643 aaKnown RBP21■□□□□ 0.95
SMPD1-201ENST00000342245 ANKRD24Q8TF21 1146 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 HPSEQ9Y251 543 aa21■□□□□ 0.95
SMPD1-201ENST00000342245 SOWAHDA6NJG2 315 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 GNGT1P63211 74 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 SKOR1P84550 965 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 ZNF589Q86UQ0 364 aaPredicted RBP20.99■□□□□ 0.95
SMPD1-201ENST00000342245 NOA1Q8NC60 698 aaKnown RBP20.99■□□□□ 0.95
SMPD1-201ENST00000342245 SH3GL2Q99962 352 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 TRIM6Q9C030 488 aaPredicted RBP20.99■□□□□ 0.95
SMPD1-201ENST00000342245 GRIN2DO15399 1336 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 GOLGA6BA6NDN3 693 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 AKAP17AQ02040 695 aaKnown RBP20.99■□□□□ 0.95
SMPD1-201ENST00000342245 NR1I3Q14994 352 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 BEND3Q5T5X7 828 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 RUBCNQ92622 972 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 KLC4Q9NSK0 619 aa20.99■□□□□ 0.95
SMPD1-201ENST00000342245 BIRC2Q13490 618 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 NBPF14Q5TI25 921 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 RAD9BQ6WBX8 426 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 PPP6R2O75170 966 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 AMPD2Q01433 879 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 CKAP4Q07065 602 aaKnown RBP20.98■□□□□ 0.95
SMPD1-201ENST00000342245 MTF1Q14872 753 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 MLKLQ8NB16 471 aa20.98■□□□□ 0.95
SMPD1-201ENST00000342245 SLC39A14Q15043 492 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 ESF1Q9H501 851 aaKnown RBP20.97■□□□□ 0.95
SMPD1-201ENST00000342245 CCDC61Q9Y6R9 512 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 NDUFAB1O14561 156 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 FECHP22830 423 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 CDR1P51861 262 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 GUCY1B3Q02153 619 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 HDGFL1Q5TGJ6 251 aa20.97■□□□□ 0.95
SMPD1-201ENST00000342245 PRR36Q9H6K5 1346 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 A0A1B0GTH6 734 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 AGPSO00116 658 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 MYO1FO00160 1098 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 EPB41P11171 864 aaKnown RBP20.96■□□□□ 0.95
SMPD1-201ENST00000342245 CNGA4Q8IV77 575 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 NECTIN2Q92692 538 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 C8orf76Q96K31 380 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 CD248Q9HCU0 757 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 CYP21A2P08686 494 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 CEP85LQ5SZL2 805 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 CCDC102BQ68D86 513 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 TMTC1Q8IUR5 882 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 CNKSR2Q8WXI2 1034 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 VCPKMTQ9H867 229 aa20.96■□□□□ 0.95
SMPD1-201ENST00000342245 MED1Q15648 1581 aaPredicted RBP20.96■□□□□ 0.95
SMPD1-201ENST00000342245 ANKRD33BA6NCL7 494 aa20.95■□□□□ 0.94
SMPD1-201ENST00000342245 SSR1P43307 286 aaKnown RBP20.95■□□□□ 0.94
SMPD1-201ENST00000342245 EXOSC10Q01780 885 aaKnown RBP20.95■□□□□ 0.94
SMPD1-201ENST00000342245 MAP3K15Q6ZN16 1313 aa20.95■□□□□ 0.94
SMPD1-201ENST00000342245 KDRP35968 1356 aa20.95■□□□□ 0.94
SMPD1-201ENST00000342245 EZRP15311 586 aaKnown RBP20.95■□□□□ 0.94
SMPD1-201ENST00000342245 PAX7P23759 505 aa20.95■□□□□ 0.94
SMPD1-201ENST00000342245 CCDC70Q6NSX1 233 aa20.95■□□□□ 0.94
SMPD1-201ENST00000342245 NFE2L3Q9Y4A8 694 aa20.95■□□□□ 0.94
SMPD1-201ENST00000342245 G3BP1Q13283 466 aaKnown RBP eCLIP20.94■□□□□ 0.94
SMPD1-201ENST00000342245 PNOCQ13519 176 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 IQCEQ6IPM2 695 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 UBE3BQ7Z3V4 1068 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 FBXL16Q8N461 479 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 SELENOOQ9BVL4 669 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 FOXO3O43524 673 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 RTN2O75298 545 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 RASSF9O75901 435 aa20.94■□□□□ 0.94
SMPD1-201ENST00000342245 PDIA3P30101 505 aaKnown RBP20.94■□□□□ 0.94
SMPD1-201ENST00000342245 CCT2P78371 535 aaKnown RBP20.94■□□□□ 0.94
SMPD1-201ENST00000342245 ACTN3Q08043 901 aaPredicted RBP20.94■□□□□ 0.94
SMPD1-201ENST00000342245 GRIK3Q13003 919 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms