RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TSPOAP1O95153 1857 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 MARCKSP29966 332 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 CBX8Q9HC52 389 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 AFMP43652 599 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 FANCCQ00597 558 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 MTHFSDQ2M296 383 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 TMED8Q6PL24 325 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 KIFAP3Q92845 792 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 UTP14AQ9BVJ6 771 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 IMPG2Q9BZV3 1241 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 HOMER2Q9NSB8 354 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 GUCA1BQ9UMX6 200 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 CEP83Q9Y592 693 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 ARID4AP29374 1257 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 NAPAP54920 295 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 GALNT17Q6IS24 598 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 CABP5Q9NP86 173 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 ZC3H6P61129 1189 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 ATRIPQ8WXE1 791 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 EXOC5O00471 708 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 CFAP221Q4G0U5 840 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 KCNG1Q9UIX4 513 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 GOLGA6BA6NDN3 693 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 ATP11AP98196 1134 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 PUM3Q15397 648 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 COPS6Q7L5N1 327 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 FBF1Q8TES7 1133 aa11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 BICC1Q9H694 974 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-202ENST00000336838 LIG1P18858 919 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 C8orf74Q6P047 294 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 TRIM58Q8NG06 486 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 CCDC114Q96M63 670 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 WDHD1O75717 1129 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 ATP5JP18859 108 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 PAK1Q13153 545 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 FRMD4BQ9Y2L6 1034 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 POSTNQ15063 836 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 RRAGDQ9NQL2 400 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 ATP10DQ9P241 1426 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 ST5P78524 1137 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 TNNI3KQ59H18 835 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 SEL1L2Q5TEA6 688 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 FPGT-TNNI3KV9GXZ4 949 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 PPFIA4O75335 1185 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 MYL1P05976 194 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 SV2BQ7L1I2 683 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 PHACTR3Q96KR7 559 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 MLH3Q9UHC1 1453 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 PHLPP2Q6ZVD8 1323 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 SPDYE3A6NKU9 549 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 FLOT1O75955 427 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 KRT28Q7Z3Y7 464 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 TMEM87AQ8NBN3 555 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 NCAPD2Q15021 1401 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 MROH5Q6ZUA9 1318 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 SAMD1Q6SPF0 538 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 PPP1R14CQ8TAE6 165 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 SPINK5Q9NQ38 1064 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 WWC3Q9ULE0 1092 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 RASSF2P50749 326 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 ARHGAP24Q8N264 748 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 NKIRAS1Q9NYS0 192 aa11.53□□□□□ -0.56
CCDC88A-202ENST00000336838 LMBR1LQ6UX01 489 aa11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 ZCRB1Q8TBF4 217 aaKnown RBP11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 CDCA7Q9BWT1 371 aaPredicted RBP11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 CYP7A1P22680 504 aa11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 PARP10Q53GL7 1025 aa11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 APBB1IPQ7Z5R6 666 aaPredicted RBP11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 RABGGTAQ92696 567 aa11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 DMRT2Q9Y5R5 561 aa11.52□□□□□ -0.56
CCDC88A-202ENST00000336838 SF3B2Q13435 895 aaKnown RBP11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 ARMC9Q7Z3E5 817 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 DENND2AQ9ULE3 1009 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 STK11IPQ8N1F8 1099 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 USHBP1Q8N6Y0 703 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 DHX58Q96C10 678 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 PLA2R1Q13018 1463 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 CCDC6Q16204 474 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 LZTFL1Q9NQ48 299 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 KIAA1468Q9P260 1216 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 EPB41P11171 864 aaKnown RBP11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 SLC9C1Q4G0N8 1177 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 EYA2O00167 538 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 APOBRQ0VD83 1088 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 STX8Q9UNK0 236 aa11.52□□□□□ -0.57
CCDC88A-202ENST00000336838 RFX7Q2KHR2 1363 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 UBE4AQ14139 1066 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 MICALL1Q8N3F8 863 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 RAB17Q9H0T7 212 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 USP32Q8NFA0 1604 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 RNMTO43148 476 aaKnown RBP11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 CALUO43852 315 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 HEATR3Q7Z4Q2 680 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 PAF1Q8N7H5 531 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 FAM71BQ8TC56 605 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 FBXO31Q5XUX0 539 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 SECISBP2LQ93073 1101 aaKnown RBP11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 ZBTB3Q9H5J0 574 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 GOLGA5Q8TBA6 731 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms