RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 SPATA5Q8NB90 893 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 ARHGEF1Q92888 912 aaKnown RBP18.63■□□□□ 0.57
USHBP1-202ENST00000324554 RPS6KA4O75676 772 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 SKILP12757 684 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 CDC27P30260 824 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 CCZ1BP86790 482 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 CCZ1P86791 482 aaPredicted RBP18.62■□□□□ 0.57
USHBP1-202ENST00000324554 AXDND1Q5T1B0 1012 aaPredicted RBP18.62■□□□□ 0.57
USHBP1-202ENST00000324554 ALG1Q9BT22 464 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 EPB41L4AQ9HCS5 686 aaPredicted RBP18.62■□□□□ 0.57
USHBP1-202ENST00000324554 KIAA1468Q9P260 1216 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 RTCBQ9Y3I0 505 aaKnown RBP18.62■□□□□ 0.57
USHBP1-202ENST00000324554 RREB1Q92766 1687 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 CCDC69A6NI79 296 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 ZPR1O75312 459 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 CDKL5O76039 1030 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 RASGRF1Q13972 1273 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 NAA30Q147X3 362 aaPredicted RBP18.62■□□□□ 0.57
USHBP1-202ENST00000324554 ALX1Q15699 326 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 DPCR1Q3MIW9 517 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 FAM196AQ6ZSG2 479 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 IGDCC4Q8TDY8 1250 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 TMEM87BQ96K49 555 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 AK7Q96M32 723 aa18.62■□□□□ 0.57
USHBP1-202ENST00000324554 NAT10Q9H0A0 1025 aaKnown RBP18.62■□□□□ 0.57
USHBP1-202ENST00000324554 NBPF11Q86T75 865 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 MICU3Q86XE3 530 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 MPHOSPH8Q99549 860 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 PRDM4Q9UKN5 801 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 PAXBP1Q9Y5B6 917 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 NEMFO60524 1076 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 SLC5A1P13866 664 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 U2AF2P26368 475 aaKnown RBP eCLIP18.61■□□□□ 0.57
USHBP1-202ENST00000324554 MAGEB6Q8N7X4 407 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 PHKBQ93100 1093 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 LY9Q9HBG7 655 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 NHSQ6T4R5 1651 aa18.61■□□□□ 0.57
USHBP1-202ENST00000324554 WTIPA6NIX2 430 aaPredicted RBP18.6■□□□□ 0.57
USHBP1-202ENST00000324554 PATL2C9JE40 543 aaKnown RBP18.6■□□□□ 0.57
USHBP1-202ENST00000324554 CEP135Q66GS9 1140 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 CLEC4GQ6UXB4 293 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 KRT27Q7Z3Y8 459 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 SGMS1Q86VZ5 419 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 VPS37DQ86XT2 251 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 IFNL3Q8IZI9 196 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 ZNF592Q92610 1267 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 INCENPQ9NQS7 918 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 DOCK2Q92608 1830 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 SPDYE4A6NLX3 237 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 ZBTB43O43298 467 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 ZNF202O95125 648 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 MBD4O95243 580 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 CMA1P23946 247 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 SLC39A14Q15043 492 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 NTRK3Q16288 839 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 KRT40Q6A162 431 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 CCDC112Q8NEF3 446 aa18.6■□□□□ 0.57
USHBP1-202ENST00000324554 BCL11BQ9C0K0 894 aaPredicted RBP18.6■□□□□ 0.57
USHBP1-202ENST00000324554 SBF2Q86WG5 1849 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 MROH7-TTC4A0A0A0MT08 1334 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 WDHD1O75717 1129 aaPredicted RBP18.59■□□□□ 0.57
USHBP1-202ENST00000324554 PFKFB1P16118 471 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 MAP3K12Q12852 859 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 CCDC152Q4G0S7 254 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 CPLX2Q6PUV4 134 aaKnown RBP18.59■□□□□ 0.57
USHBP1-202ENST00000324554 NYAP1Q6ZVC0 841 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 NAPBQ9H115 298 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 NARFQ9UHQ1 456 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 RC3H1Q5TC82 1133 aaKnown RBP18.59■□□□□ 0.57
USHBP1-202ENST00000324554 NFXL1Q6ZNB6 911 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 SETDB2Q96T68 719 aa18.59■□□□□ 0.57
USHBP1-202ENST00000324554 FAM217BQ9NTX9 383 aaPredicted RBP18.59■□□□□ 0.57
USHBP1-202ENST00000324554 ECM29Q5VYK3 1845 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 COL4A1P02462 1669 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 BIN1O00499 593 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 RANBP6O60518 1105 aaKnown RBP18.58■□□□□ 0.57
USHBP1-202ENST00000324554 ZSCAN20P17040 1043 aaPredicted RBP18.58■□□□□ 0.57
USHBP1-202ENST00000324554 MARCKSP29966 332 aaPredicted RBP18.58■□□□□ 0.57
USHBP1-202ENST00000324554 CTDSPL2Q05D32 466 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 TMEM67Q5HYA8 995 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 BPIFA3Q9BQP9 254 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 MYL10Q9BUA6 226 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 ARMT1Q9H993 441 aa18.58■□□□□ 0.57
USHBP1-202ENST00000324554 TRMT1Q9NXH9 659 aaKnown RBP18.58■□□□□ 0.57
USHBP1-202ENST00000324554 TAF1P21675 1872 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 GOLGA8AA7E2F4 631 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 SLC3A2P08195 630 aaKnown RBP18.58■□□□□ 0.56
USHBP1-202ENST00000324554 RFC4P35249 363 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 LIFRP42702 1097 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 SYCP1Q15431 976 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 ZSWIM5Q9P217 1185 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 TACC3Q9Y6A5 838 aa18.58■□□□□ 0.56
USHBP1-202ENST00000324554 CICQ96RK0 1608 aaPredicted RBP18.57■□□□□ 0.56
USHBP1-202ENST00000324554 IARSP41252 1262 aaKnown RBP18.57■□□□□ 0.56
USHBP1-202ENST00000324554 ZRSR1Q15695 479 aaKnown RBP18.57■□□□□ 0.56
USHBP1-202ENST00000324554 NBPF5PQ86XG9 351 aaPredicted RBP18.57■□□□□ 0.56
USHBP1-202ENST00000324554 GSG1L2A8MUP6 293 aa18.57■□□□□ 0.56
USHBP1-202ENST00000324554 PTPN14Q15678 1187 aa18.57■□□□□ 0.56
USHBP1-202ENST00000324554 TIAM2Q8IVF5 1701 aa18.56■□□□□ 0.56
USHBP1-202ENST00000324554 CHD4Q14839 1912 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms