RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 USP17L21D6R901 530 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 MRPS9P82933 396 aaKnown RBP15.25■□□□□ 0.03
RFFL-201ENST00000315249 MMP10P09238 476 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 BIRC3Q13489 604 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 OTUD7BQ6GQQ9 843 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 IFFO1Q0D2I5 559 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 CCDC65Q8IXS2 484 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 ALAS1P13196 640 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 ARHGEF16Q5VV41 709 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 PROCA1Q8NCQ7 364 aaPredicted RBP15.25■□□□□ 0.03
RFFL-201ENST00000315249 IBTKQ9P2D0 1353 aaPredicted RBP15.25■□□□□ 0.03
RFFL-201ENST00000315249 EEF2P13639 858 aaKnown RBP15.25■□□□□ 0.03
RFFL-201ENST00000315249 IL6STP40189 918 aaPredicted RBP15.25■□□□□ 0.03
RFFL-201ENST00000315249 STRN3Q13033 797 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 HLTFQ14527 1009 aaKnown RBP eCLIP15.25■□□□□ 0.03
RFFL-201ENST00000315249 EDC3Q96F86 508 aaKnown RBP15.25■□□□□ 0.03
RFFL-201ENST00000315249 SHROOM2Q13796 1616 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 SLC27A2O14975 620 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 STX17P56962 302 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 PABPC4Q13310 644 aaKnown RBP eCLIP15.25■□□□□ 0.038e-7■■□□□ 12
RFFL-201ENST00000315249 METTL13Q8N6R0 699 aa15.25■□□□□ 0.03
RFFL-201ENST00000315249 EIF3JO75822 258 aaKnown RBP15.24■□□□□ 0.03
RFFL-201ENST00000315249 ARHGEF35A5YM69 484 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 BTDP43251 543 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 NCOA5Q9HCD5 579 aaKnown RBP15.24■□□□□ 0.03
RFFL-201ENST00000315249 SSX2IPQ9Y2D8 614 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 FRMD4BQ9Y2L6 1034 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 TESPA1A2RU30 521 aaPredicted RBP15.24■□□□□ 0.03
RFFL-201ENST00000315249 LRRC24Q50LG9 513 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 GLG1Q92896 1179 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 NAP1L4Q99733 375 aaKnown RBP15.24■□□□□ 0.03
RFFL-201ENST00000315249 JADE2Q9NQC1 790 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 SV2BQ7L1I2 683 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 CCDC117Q8IWD4 279 aaPredicted RBP15.24■□□□□ 0.03
RFFL-201ENST00000315249 LRRC47Q8N1G4 583 aaKnown RBP15.24■□□□□ 0.03
RFFL-201ENST00000315249 CHURC1Q8WUH1 139 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 UBXN4Q92575 508 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 BRPF3Q9ULD4 1205 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 XDHP47989 1333 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 RAD50Q92878 1312 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 ANKRD35Q8N283 1001 aa15.24■□□□□ 0.03
RFFL-201ENST00000315249 DEXIO95424 95 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 OTUD6BQ8N6M0 293 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 KRT5P13647 590 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 PHKBQ93100 1093 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 TAOK3Q9H2K8 898 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 THRAP3Q9Y2W1 955 aaKnown RBP15.23■□□□□ 0.03
RFFL-201ENST00000315249 RTL1A6NKG5 1358 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 RPS6KB1P23443 525 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 LEKR1Q6ZMV7 388 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 CCDC91Q7Z6B0 441 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 FLOT1O75955 427 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 PCCAP05165 728 aaPredicted RBP15.23■□□□□ 0.03
RFFL-201ENST00000315249 DNM2P50570 870 aa15.23■□□□□ 0.03
RFFL-201ENST00000315249 ADCY7P51828 1080 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 MLXIPQ9HAP2 919 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 FAM135BQ49AJ0 1406 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 LPXNO60711 386 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 SMC1AQ14683 1233 aaKnown RBP15.22■□□□□ 0.03
RFFL-201ENST00000315249 RNF169Q8NCN4 708 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 PIGBQ92521 554 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 LRRC45Q96CN5 670 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 CRACR2AQ9BSW2 395 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 C21orf2O43822 256 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 CCDC93Q567U6 631 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 F13A1P00488 732 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 EN1Q05925 392 aaPredicted RBP15.22■□□□□ 0.03
RFFL-201ENST00000315249 DACT1Q9NYF0 836 aa15.22■□□□□ 0.03
RFFL-201ENST00000315249 RBM10P98175 930 aaKnown RBP15.21■□□□□ 0.03
RFFL-201ENST00000315249 ANO6Q4KMQ2 910 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 ARPP21Q9UBL0 812 aaPredicted RBP15.21■□□□□ 0.03
RFFL-201ENST00000315249 KDRP35968 1356 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 TERF1P54274 439 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 RBM6P78332 1123 aaKnown RBP15.21■□□□□ 0.03
RFFL-201ENST00000315249 RAD51AP2Q09MP3 1159 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 DPP9Q86TI2 863 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 NLRX1Q86UT6 975 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 DKC1O60832 514 aaKnown RBP eCLIP15.21■□□□□ 0.03
RFFL-201ENST00000315249 IFI16Q16666 785 aaKnown RBP15.21■□□□□ 0.03
RFFL-201ENST00000315249 TTLL6Q8N841 843 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 CSRNP1Q96S65 589 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 PROSER3Q2NL68 480 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 CERKQ8TCT0 537 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 GLT8D2Q9H1C3 349 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 MAP3K4Q9Y6R4 1608 aa15.21■□□□□ 0.03
RFFL-201ENST00000315249 HAUS3Q68CZ6 603 aa15.21■□□□□ 0.02
RFFL-201ENST00000315249 CTAGE1Q96RT6 745 aa15.21■□□□□ 0.02
RFFL-201ENST00000315249 SEC31BQ9NQW1 1179 aa15.21■□□□□ 0.02
RFFL-201ENST00000315249 PSDA5PKW4 1024 aaPredicted RBP15.21■□□□□ 0.02
RFFL-201ENST00000315249 PPARAQ07869 468 aa15.21■□□□□ 0.02
RFFL-201ENST00000315249 ARMC9Q7Z3E5 817 aa15.21■□□□□ 0.02
RFFL-201ENST00000315249 IQUBQ8NA54 791 aa15.21■□□□□ 0.02
RFFL-201ENST00000315249 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.21■□□□□ 0.02
RFFL-201ENST00000315249 PRAMEF22A3QJZ6 481 aa15.2■□□□□ 0.02
RFFL-201ENST00000315249 USP6P35125 1406 aa15.2■□□□□ 0.02
RFFL-201ENST00000315249 SPECC1Q5M775 1068 aa15.2■□□□□ 0.02
RFFL-201ENST00000315249 BRAPQ7Z569 592 aa15.2■□□□□ 0.02
RFFL-201ENST00000315249 CDAN1Q8IWY9 1227 aa15.2■□□□□ 0.02
RFFL-201ENST00000315249 ADGRL3Q9HAR2 1447 aa15.2■□□□□ 0.02
RFFL-201ENST00000315249 BICDL2A1A5D9 508 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms