RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SLC39A6Q13433 755 aa19.42■□□□□ 0.7
SYNPO-201ENST00000307662 XPO4Q9C0E2 1151 aaKnown RBP19.42■□□□□ 0.7
SYNPO-201ENST00000307662 CEP128Q6ZU80 1094 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 BICC1Q9H694 974 aaKnown RBP19.41■□□□□ 0.7
SYNPO-201ENST00000307662 DEXIO95424 95 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 ERCC6LQ2NKX8 1250 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 PPP1R1BQ9UD71 204 aaPredicted RBP19.41■□□□□ 0.7
SYNPO-201ENST00000307662 MAP3K5Q99683 1374 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 TRAF5O00463 557 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 IQSEC3Q9UPP2 1182 aaPredicted RBP19.41■□□□□ 0.7
SYNPO-201ENST00000307662 KRT9P35527 623 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 PDE4DQ08499 809 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 PNMA8AQ86V59 439 aaPredicted RBP19.41■□□□□ 0.7
SYNPO-201ENST00000307662 IMPG2Q9BZV3 1241 aa19.41■□□□□ 0.7
SYNPO-201ENST00000307662 ZMYM3Q14202 1370 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 TNNI2P48788 182 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 MAGEB6Q8N7X4 407 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 RPGRIP1Q96KN7 1286 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 DCAF17Q5H9S7 520 aaPredicted RBP19.4■□□□□ 0.7
SYNPO-201ENST00000307662 TMEM87BQ96K49 555 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 DDX23Q9BUQ8 820 aaKnown RBP19.4■□□□□ 0.7
SYNPO-201ENST00000307662 ZNF215Q9UL58 517 aaPredicted RBP19.4■□□□□ 0.7
SYNPO-201ENST00000307662 INSRP06213 1382 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 RNASE9P60153 205 aaKnown RBP19.4■□□□□ 0.7
SYNPO-201ENST00000307662 DMTNQ08495 405 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 CNNM4Q6P4Q7 775 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 TAOK1Q7L7X3 1001 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 CSGALNACT2Q8N6G5 542 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 EYA1Q99502 592 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 NCOA5Q9HCD5 579 aaKnown RBP19.4■□□□□ 0.7
SYNPO-201ENST00000307662 CCDC65Q8IXS2 484 aa19.4■□□□□ 0.7
SYNPO-201ENST00000307662 TSKSQ9UJT2 592 aa19.39■□□□□ 0.7
SYNPO-201ENST00000307662 YTHDC2Q9H6S0 1430 aaKnown RBP19.39■□□□□ 0.69
SYNPO-201ENST00000307662 PSMC4P43686 418 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 WHAMMP3Q1A5X7 153 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 LONRF3Q496Y0 759 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 EFCAB8A8MWE9 144 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 E7EVH7 732 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 PPFIA4O75335 1185 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 MTMR3Q13615 1198 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 SMARCC2Q8TAQ2 1214 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 PPP1R12CQ9BZL4 782 aa19.39■□□□□ 0.69
SYNPO-201ENST00000307662 POSTNQ15063 836 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 CFAP157Q5JU67 520 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 RAB3IL1Q8TBN0 382 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 SLF1Q9BQI6 1058 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 ASIC2Q16515 512 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 MIPOL1Q8TD10 442 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 PHF23Q9BUL5 403 aaPredicted RBP19.38■□□□□ 0.69
SYNPO-201ENST00000307662 CFAP221Q4G0U5 840 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 TXNDC16Q9P2K2 825 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.38■□□□□ 0.69
SYNPO-201ENST00000307662 CLGNO14967 610 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 GAS2L3Q86XJ1 694 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 VSIG1Q86XK7 387 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 TAB2Q9NYJ8 693 aa19.38■□□□□ 0.69
SYNPO-201ENST00000307662 CSRNP2Q9H175 543 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 BLMP54132 1417 aaPredicted RBP19.37■□□□□ 0.69
SYNPO-201ENST00000307662 MIGA1Q8NAN2 632 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 WWC3Q9ULE0 1092 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 EPB41P11171 864 aaKnown RBP19.37■□□□□ 0.69
SYNPO-201ENST00000307662 SLC9C1Q4G0N8 1177 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 GPT2Q8TD30 523 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 CCDC51Q96ER9 411 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 FAM227BQ96M60 508 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 SPOPO43791 374 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 MAGEA1P43355 309 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 GOLGA5Q8TBA6 731 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 VCXQ9H320 206 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 MAPK8IP1Q9UQF2 711 aa19.37■□□□□ 0.69
SYNPO-201ENST00000307662 OTUD7BQ6GQQ9 843 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 G2E3Q7L622 706 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 HDAC9Q9UKV0 1011 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 PABPN1LA6NDY0 278 aaKnown RBP19.36■□□□□ 0.69
SYNPO-201ENST00000307662 TNFAIP3P21580 790 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 LRMPQ12912 555 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 ZKSCAN3Q9BRR0 538 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 PLCB1Q9NQ66 1216 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 CAPN7Q9Y6W3 813 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 SPDYE3A6NKU9 549 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 LRRC8AQ8IWT6 810 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 KLHL7Q8IXQ5 586 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 DIS3L2Q8IYB7 885 aaKnown RBP19.36■□□□□ 0.69
SYNPO-201ENST00000307662 VCX3BQ9H321 246 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 ANGEL1Q9UNK9 670 aaKnown RBP19.36■□□□□ 0.69
SYNPO-201ENST00000307662 LRRC59Q96AG4 307 aaKnown RBP19.36■□□□□ 0.69
SYNPO-201ENST00000307662 PSMD1Q99460 953 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 TM6SF1Q9BZW5 370 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 SAR1BQ9Y6B6 198 aa19.36■□□□□ 0.69
SYNPO-201ENST00000307662 B4E1Z4 1266 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 GNGT1P63211 74 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 UBL4BQ8N7F7 174 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 TRPM2O94759 1503 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 CEP104O60308 925 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 TPD52P55327 224 aaPredicted RBP19.35■□□□□ 0.69
SYNPO-201ENST00000307662 INF2Q27J81 1249 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 SPATS2Q86XZ4 545 aaKnown RBP19.35■□□□□ 0.69
SYNPO-201ENST00000307662 MCUR1Q96AQ8 359 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 MRFAP1L1Q96HT8 127 aa19.35■□□□□ 0.69
SYNPO-201ENST00000307662 NAP1L4Q99733 375 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms