RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 ANGEL1Q9UNK9 670 aaKnown RBP10.63□□□□□ -0.71
PTPRE-202ENST00000306042 DPEP1P16444 411 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 CFAP100Q494V2 611 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 KIFC2Q96AC6 838 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 NOD1Q9Y239 953 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 USP32Q8NFA0 1604 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 SPDYE4A6NLX3 237 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 BACH1O14867 736 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 SGSM2O43147 1006 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 STX6O43752 255 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 SLC10A4Q96EP9 437 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 STXBP4Q6ZWJ1 553 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 RUFY3Q7L099 469 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 DSCC1Q9BVC3 393 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 CD209Q9NNX6 404 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 CCDC192P0DO97 292 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 TMX3Q96JJ7 454 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 CCDC17Q96LX7 622 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 GLT8D2Q9H1C3 349 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 DHX36Q9H2U1 1008 aaKnown RBP10.62□□□□□ -0.71
PTPRE-202ENST00000306042 SLC27A2O14975 620 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 DIXDC1Q155Q3 683 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 NUP62CLQ9H1M0 184 aa10.62□□□□□ -0.71
PTPRE-202ENST00000306042 MEGF6O75095 1541 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 GPSM2P81274 684 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 TBCAO75347 108 aaKnown RBP10.61□□□□□ -0.71
PTPRE-202ENST00000306042 CCDC174Q6PII3 467 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 ZNF34Q8IZ26 560 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 PAF1Q8N7H5 531 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 RNF214Q8ND24 703 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 TBC1D32Q96NH3 1257 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 TSG101Q99816 390 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 PYM1Q9BRP8 204 aaKnown RBP10.61□□□□□ -0.71
PTPRE-202ENST00000306042 ZSCAN16Q9H4T2 348 aaPredicted RBP10.61□□□□□ -0.71
PTPRE-202ENST00000306042 TNS2Q63HR2 1409 aa10.61□□□□□ -0.71
PTPRE-202ENST00000306042 SERPINC1P01008 464 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 KRT2P35908 639 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 LRRC27Q9C0I9 530 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 GPBP1L1Q9HC44 474 aaPredicted RBP10.6□□□□□ -0.71
PTPRE-202ENST00000306042 TFIP11Q9UBB9 837 aaKnown RBP10.6□□□□□ -0.71
PTPRE-202ENST00000306042 SWAP70Q9UH65 585 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 ZNRF3Q9ULT6 936 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 PLSCR1O15162 318 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 TRAK2O60296 914 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 FLOT1O75955 427 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 RASGRF1Q13972 1273 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 USH1GQ495M9 461 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 EPHA10Q5JZY3 1008 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 LZTS2Q9BRK4 669 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 TRIM5Q9C035 493 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 TLR7Q9NYK1 1049 aaKnown RBP10.6□□□□□ -0.71
PTPRE-202ENST00000306042 SERPINB13Q9UIV8 391 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 KIF1AQ12756 1690 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 STYK1Q6J9G0 422 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 MYCLP12524 364 aaPredicted RBP10.6□□□□□ -0.71
PTPRE-202ENST00000306042 AK2P54819 239 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 CNNM3Q8NE01 707 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 NAP1L4Q99733 375 aaKnown RBP10.6□□□□□ -0.71
PTPRE-202ENST00000306042 SPC25Q9HBM1 224 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 PI4KBQ9UBF8 816 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 ATP6V0A2Q9Y487 856 aa10.6□□□□□ -0.71
PTPRE-202ENST00000306042 TRIM75PA6NK02 468 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 SASH1O94885 1247 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 CCNA1P78396 465 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 PI16Q6UXB8 463 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 ILDR1Q86SU0 546 aaPredicted RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 PANK2Q9BZ23 570 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 NOP56O00567 594 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 CFBP00751 764 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 GYS1P13807 737 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 CRKP46108 304 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 USP14P54578 494 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 NCBP1Q09161 790 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 SYCP3Q8IZU3 236 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 SMARCE1Q969G3 411 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 BICD1Q96G01 975 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 PKD2L1Q9P0L9 805 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 OSBPP22059 807 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 MKRN3Q13064 507 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 PPP2R5BQ15173 497 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 MIGA2Q7L4E1 593 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 KRT26Q7Z3Y9 468 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 ZNHIT6Q9NWK9 470 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 ZBTB21Q9ULJ3 1066 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 V9GY48 417 aaPredicted RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 SNAP23O00161 211 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 RPS6KB1P23443 525 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 DYNLL1P63167 89 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 MECOMQ03112 1051 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 SF3B3Q15393 1217 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 DHX37Q8IY37 1157 aaKnown RBP10.59□□□□□ -0.71
PTPRE-202ENST00000306042 PALD1Q9ULE6 856 aa10.59□□□□□ -0.71
PTPRE-202ENST00000306042 TNPO1Q92973 898 aaKnown RBP10.58□□□□□ -0.72
PTPRE-202ENST00000306042 SEC62Q99442 399 aaKnown RBP10.58□□□□□ -0.72
PTPRE-202ENST00000306042 TSPY26PQ9H489 355 aa10.58□□□□□ -0.72
PTPRE-202ENST00000306042 NFKBIBQ15653 356 aa10.58□□□□□ -0.72
PTPRE-202ENST00000306042 INTS5Q6P9B9 1019 aaKnown RBP10.58□□□□□ -0.72
PTPRE-202ENST00000306042 APOBEC3FQ8IUX4 373 aaKnown RBP10.58□□□□□ -0.72
PTPRE-202ENST00000306042 LRRC47Q8N1G4 583 aaKnown RBP10.58□□□□□ -0.72
PTPRE-202ENST00000306042 PNMA2Q9UL42 364 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms