RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 KLHL10Q6JEL2 608 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 FAM71BQ8TC56 605 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 HDAC6Q9UBN7 1215 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 TRIM10Q9UDY6 481 aa15.39■□□□□ 0.05
SKA3-201ENST00000298260 MKRN1Q9UHC7 482 aaKnown RBP15.39■□□□□ 0.05
SKA3-201ENST00000298260 CACNA1FO60840 1977 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 KLF18A0A0U1RQI7 1052 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 GOLGA8BA8MQT2 603 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 KIF5CO60282 957 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 KIF23Q02241 960 aaPredicted RBP15.38■□□□□ 0.05
SKA3-201ENST00000298260 FKBP15Q5T1M5 1219 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 KCNV1Q6PIU1 500 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 KSR2Q6VAB6 950 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 AFAP1L1Q8TED9 768 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 ITSN1Q15811 1721 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 LAMA4Q16363 1823 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 USP6P35125 1406 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 CDC25AP30304 524 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 MMP14P50281 582 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 TNNI3KQ59H18 835 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 NEUROD6Q96NK8 337 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 SAMM50Q9Y512 469 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 FPGT-TNNI3KV9GXZ4 949 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 SBNO1A3KN83 1393 aa15.38■□□□□ 0.05
SKA3-201ENST00000298260 GOLGA6L9A6NEM1 432 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 SRGAP2O75044 1071 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 IGKV5-2P06315 115 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 MYL6BP14649 208 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 CASP1P29466 404 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 MRPS25P82663 173 aaKnown RBP15.37■□□□□ 0.05
SKA3-201ENST00000298260 EFCAB13Q8IY85 973 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 NKX2-3Q8TAU0 364 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 ERLIN2O94905 339 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 HSPD1P10809 573 aaKnown RBP15.37■□□□□ 0.05
SKA3-201ENST00000298260 HOXC9P31274 260 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 KAT14Q9H8E8 782 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 RAI14Q9P0K7 980 aa15.37■□□□□ 0.05
SKA3-201ENST00000298260 DBF4Q9UBU7 674 aaPredicted RBP15.37■□□□□ 0.05
SKA3-201ENST00000298260 CTAGE15A4D2H0 777 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 CPLX1O14810 134 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 CTAGE8P0CG41 777 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 ATP5JP18859 108 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 HNRNPH1P31943 449 aaKnown RBP15.36■□□□□ 0.05
SKA3-201ENST00000298260 SLC39A14Q15043 492 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 SLC9C2Q5TAH2 1124 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 CTAGE6Q86UF2 777 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 CTAGE4Q8IX94 777 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 CEP112Q8N8E3 955 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 PHKBQ93100 1093 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 AKAP12Q02952 1782 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 CTAGE9A4FU28 777 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 MYBL2P10244 700 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 GGCXP38435 758 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 BANK1Q8NDB2 785 aa15.36■□□□□ 0.05
SKA3-201ENST00000298260 USP31Q70CQ4 1352 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 PALLDQ8WX93 1383 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 CAPZA3Q96KX2 299 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 MAN1B1Q9UKM7 699 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 HPS5Q9UPZ3 1129 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 N4BP2Q86UW6 1770 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 A0A087WUV0 522 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 AKR1B15C9JRZ8 316 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 PRPF6O94906 941 aaKnown RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 CASP14P31944 242 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 TIMM10P62072 90 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 SMARCC1Q92922 1105 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 HPSEQ9Y251 543 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 FAM169AQ9Y6X4 670 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 RNF225M0QZC1 329 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 MAP2K2P36507 400 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 VPS37DQ86XT2 251 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 SMYD4Q8IYR2 804 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 ABTB2Q8N961 1025 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 ZNF274Q96GC6 653 aaPredicted RBP15.35■□□□□ 0.05
SKA3-201ENST00000298260 AGXT2Q9BYV1 514 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 KCNH3Q9ULD8 1083 aa15.35■□□□□ 0.05
SKA3-201ENST00000298260 DIP2AQ14689 1571 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 CCDC91Q7Z6B0 441 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 MYO1FO00160 1098 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 ECM2O94769 699 aaPredicted RBP15.34■□□□□ 0.05
SKA3-201ENST00000298260 HMGB1P09429 215 aaKnown RBP15.34■□□□□ 0.05
SKA3-201ENST00000298260 ZNF18P17022 549 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 FXR1P51114 621 aaKnown RBP eCLIP15.34■□□□□ 0.05
SKA3-201ENST00000298260 CCDC102BQ68D86 513 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 SUGP1Q8IWZ8 645 aaKnown RBP15.34■□□□□ 0.05
SKA3-201ENST00000298260 ANKRD20A12PQ8NF67 263 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 LINS1Q8NG48 757 aa15.34■□□□□ 0.05
SKA3-201ENST00000298260 M0R2C6 588 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 CCDC172P0C7W6 258 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 USP49Q70CQ1 688 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 RIC3Q7Z5B4 369 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 SLF1Q9BQI6 1058 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 JPH2Q9BR39 696 aaPredicted RBP15.33■□□□□ 0.04
SKA3-201ENST00000298260 HPCAL4Q9UM19 191 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 PHF8Q9UPP1 1060 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 PTPAQ15257 358 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 SERTAD1Q9UHV2 236 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 SUFUQ9UMX1 484 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 CDHR2Q9BYE9 1310 aa15.33■□□□□ 0.04
SKA3-201ENST00000298260 ZNF335Q9H4Z2 1342 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms