RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 GINS2Q9Y248 185 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 CFAP74Q9C0B2 1584 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 TRAF5O00463 557 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 KRT25Q7Z3Z0 450 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 FNBP1Q96RU3 617 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 SNX14Q9Y5W7 946 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 NLRP1Q9C000 1473 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 MBD5Q9P267 1494 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 ADCY7P51828 1080 aa20.88■□□□□ 0.93
PCDH1-201ENST00000287008 BCCIPQ9P287 314 aaKnown RBP eCLIP20.88■□□□□ 0.93
PCDH1-201ENST00000287008 TACC1O75410 805 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 CFBP00751 764 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 HARSP12081 509 aaKnown RBP20.87■□□□□ 0.93
PCDH1-201ENST00000287008 TXKP42681 527 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 SMC1AQ14683 1233 aaKnown RBP20.87■□□□□ 0.93
PCDH1-201ENST00000287008 CHURC1Q8WUH1 139 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 IFT74Q96LB3 600 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 PABPN1LA6NDY0 278 aaKnown RBP20.87■□□□□ 0.93
PCDH1-201ENST00000287008 GIGYF2Q6Y7W6 1299 aaKnown RBP20.87■□□□□ 0.93
PCDH1-201ENST00000287008 ARHGAP27Q6ZUM4 889 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 CCDC186Q7Z3E2 898 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 ELP1O95163 1332 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 KDRP35968 1356 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 ARHGEF35A5YM69 484 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 KIF5AQ12840 1032 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 BIRC3Q13489 604 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 ZBTB1Q9Y2K1 713 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 SAMD9Q5K651 1589 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 UGGT1Q9NYU2 1555 aa20.87■□□□□ 0.93
PCDH1-201ENST00000287008 CCDC169A6NNP5 214 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 DCAF15Q66K64 600 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 FRMD4BQ9Y2L6 1034 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 IKBKGQ9Y6K9 419 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 SELENOOQ9BVL4 669 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 ZSWIM4Q9H7M6 989 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 HOMER2Q9NSB8 354 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 A0A1B0GVL5 298 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 ANO1Q5XXA6 986 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 LMBR1Q8WVP7 490 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 MYL10Q9BUA6 226 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 MLH3Q9UHC1 1453 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 KRT83P78385 493 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 UBXN1Q04323 297 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 DSCC1Q9BVC3 393 aa20.86■□□□□ 0.93
PCDH1-201ENST00000287008 CCNT1O60563 726 aaKnown RBP20.85■□□□□ 0.93
PCDH1-201ENST00000287008 KRT27Q7Z3Y8 459 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 FMNL3Q8IVF7 1028 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 EEF2P13639 858 aaKnown RBP20.85■□□□□ 0.93
PCDH1-201ENST00000287008 CKAP4Q07065 602 aaKnown RBP20.85■□□□□ 0.93
PCDH1-201ENST00000287008 TTC38Q5R3I4 469 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 AZI2Q9H6S1 392 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 ARHGEF5Q12774 1597 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 AATKQ6ZMQ8 1374 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 FAM135BQ49AJ0 1406 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 ARID4AP29374 1257 aaPredicted RBP20.85■□□□□ 0.93
PCDH1-201ENST00000287008 DDX12PQ92771 950 aa20.85■□□□□ 0.93
PCDH1-201ENST00000287008 FAM160A1Q05DH4 1040 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 USH1GQ495M9 461 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 DCAF17Q5H9S7 520 aaPredicted RBP20.84■□□□□ 0.93
PCDH1-201ENST00000287008 CEP135Q66GS9 1140 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 KRT86O43790 486 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 BEND3Q5T5X7 828 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 EAF2Q96CJ1 260 aaPredicted RBP20.84■□□□□ 0.93
PCDH1-201ENST00000287008 EDC3Q96F86 508 aaKnown RBP20.84■□□□□ 0.93
PCDH1-201ENST00000287008 LUC7L2Q9Y383 392 aaKnown RBP20.84■□□□□ 0.93
PCDH1-201ENST00000287008 DOK7Q18PE1 504 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.84■□□□□ 0.93
PCDH1-201ENST00000287008 BBXQ8WY36 941 aaPredicted RBP20.84■□□□□ 0.93
PCDH1-201ENST00000287008 AS3MTQ9HBK9 375 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 LRWD1Q9UFC0 647 aa20.84■□□□□ 0.93
PCDH1-201ENST00000287008 ERBB3P21860 1342 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 SHTN1A0MZ66 631 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 BCAMP50895 628 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 UBE4AQ14139 1066 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 ZNF335Q9H4Z2 1342 aaPredicted RBP20.83■□□□□ 0.93
PCDH1-201ENST00000287008 GJC1P36383 396 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 CHRNDQ07001 517 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 PPARAQ07869 468 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 PDE4DQ08499 809 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 TSNARE1Q96NA8 513 aa20.83■□□□□ 0.93
PCDH1-201ENST00000287008 KIF24Q5T7B8 1368 aa20.83■□□□□ 0.92
PCDH1-201ENST00000287008 ROBO2Q9HCK4 1378 aa20.83■□□□□ 0.92
PCDH1-201ENST00000287008 PDE6AP16499 860 aa20.83■□□□□ 0.92
PCDH1-201ENST00000287008 SULF1Q8IWU6 871 aa20.83■□□□□ 0.92
PCDH1-201ENST00000287008 STK24Q9Y6E0 443 aa20.83■□□□□ 0.92
PCDH1-201ENST00000287008 IGSF1Q8N6C5 1336 aa20.83■□□□□ 0.92
PCDH1-201ENST00000287008 PLCB3Q01970 1234 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 FAM47AQ5JRC9 791 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 REXO1Q8N1G1 1221 aaKnown RBP20.82■□□□□ 0.92
PCDH1-201ENST00000287008 SSX2IPQ9Y2D8 614 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 CCDC175P0C221 793 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 EPB41P11171 864 aaKnown RBP20.82■□□□□ 0.92
PCDH1-201ENST00000287008 PHKBQ93100 1093 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 KCNH3Q9ULD8 1083 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 MYL5Q02045 173 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 WDR44Q5JSH3 913 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 FAM182BQ5T319 152 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 NCAPH2Q6IBW4 605 aa20.82■□□□□ 0.92
PCDH1-201ENST00000287008 FNBP4Q8N3X1 1017 aaPredicted RBP20.82■□□□□ 0.92
PCDH1-201ENST00000287008 SNX29Q8TEQ0 813 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms