RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 NBPF7P0C2Y1 421 aaPredicted RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 ACTN1P12814 892 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 BRD2P25440 801 aaKnown RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 COPB2P35606 906 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 IL6STP40189 918 aaPredicted RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 VPS36Q86VN1 386 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 C16orf45Q96MC5 204 aaPredicted RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 TTF2Q9UNY4 1162 aaKnown RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 EZRP15311 586 aaKnown RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 CALML3P27482 149 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 C10orf67Q8IYJ2 551 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 BANK1Q8NDB2 785 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 MYO3AQ8NEV4 1616 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 URI1O94763 535 aaPredicted RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 MYCP01106 439 aaPredicted RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 SETSIPP0DME0 302 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 PDE4DQ08499 809 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 GBP6Q6ZN66 633 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 SPATA24Q86W54 205 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 MEIS3Q99687 375 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 RSPH14Q9UHP6 348 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 MST1RQ04912 1400 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 A0A1B0GUL7 405 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 CYP27B1O15528 508 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 MX1P20591 662 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 MICALL1Q8N3F8 863 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 GTF3C2Q8WUA4 911 aaPredicted RBP8.86□□□□□ -0.99
USP3-201ENST00000268049 RTL9Q8NET4 1388 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 DEPDC5O75140 1603 aa8.86□□□□□ -0.99
USP3-201ENST00000268049 BARGINQ6ZT62 677 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 KRT26Q7Z3Y9 468 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 HTATIP2Q9BUP3 242 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 CDK12Q9NYV4 1490 aaPredicted RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 SPATA31A5Q5VU36 1347 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 SPATA31A7Q8IWB4 1347 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 PUM3Q15397 648 aaKnown RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 C1orf228Q6PIY5 440 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 MLXIPQ9HAP2 919 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 ANGEL1Q9UNK9 670 aaKnown RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 ZBTB1Q9Y2K1 713 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 XDHP47989 1333 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 BRPF1P55201 1214 aaPredicted RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 IFIT1BQ5T764 474 aaKnown RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 ILDR1Q86SU0 546 aaPredicted RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 ANKRD35Q8N283 1001 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 HINFPQ9BQA5 517 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 FAM50BQ9Y247 325 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 PAXBP1Q9Y5B6 917 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 QRICH2Q9H0J4 1663 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 POTEB2H3BUK9 544 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 ZSCAN12O43309 604 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 TMOD1P28289 359 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 GTF2IP78347 998 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 SYNCQ9H7C4 482 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 PRDM5Q9NQX1 630 aaPredicted RBP8.85□□□□□ -0.99
USP3-201ENST00000268049 LEMD3Q9Y2U8 911 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 C3P01024 1663 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 NRXN1Q9ULB1 1477 aa8.85□□□□□ -0.99
USP3-201ENST00000268049 SMARCA5O60264 1052 aaPredicted RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 IGSF3O75054 1194 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 HELBQ8NG08 1087 aaPredicted RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 IFT74Q96LB3 600 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 SNRKQ9NRH2 765 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 USP40Q9NVE5 1235 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 IQSEC3Q9UPP2 1182 aaPredicted RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 PNPLA6Q8IY17 1366 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 MROH5Q6ZUA9 1318 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 ELMOD1Q8N336 334 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 NUP62CLQ9H1M0 184 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 TCP10L2B9ZVM9 353 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 VEGFAP15692 232 aaPredicted RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 MARCKSP29966 332 aaPredicted RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 TMEM67Q5HYA8 995 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 GIGYF2Q6Y7W6 1299 aaKnown RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 ITGA6P23229 1130 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 SFPQP23246 707 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP3-201ENST00000268049 NSMFQ6X4W1 530 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 G2E3Q7L622 706 aa8.84□□□□□ -0.99
USP3-201ENST00000268049 FASTKD5Q7L8L6 764 aaKnown RBP8.84□□□□□ -0.99
USP3-201ENST00000268049 A0A1B0GUA9 196 aa8.84□□□□□ -1
USP3-201ENST00000268049 EIF4E1BA6NMX2 242 aaKnown RBP8.84□□□□□ -1
USP3-201ENST00000268049 GNAT1P11488 350 aa8.84□□□□□ -1
USP3-201ENST00000268049 KRT13P13646 458 aa8.84□□□□□ -1
USP3-201ENST00000268049 HSPA4P34932 840 aa8.84□□□□□ -1
USP3-201ENST00000268049 ARHGAP29Q52LW3 1261 aa8.84□□□□□ -1
USP3-201ENST00000268049 MCTP2Q6DN12 878 aa8.84□□□□□ -1
USP3-201ENST00000268049 KIAA1841Q6NSI8 718 aa8.84□□□□□ -1
USP3-201ENST00000268049 CWC27Q6UX04 472 aaKnown RBP8.84□□□□□ -1
USP3-201ENST00000268049 OGFRQ9NZT2 677 aa8.84□□□□□ -1
USP3-201ENST00000268049 TFRCP02786 760 aaKnown RBP8.83□□□□□ -1
USP3-201ENST00000268049 XRCC6P12956 609 aaKnown RBP eCLIP8.83□□□□□ -1
USP3-201ENST00000268049 CASQ1P31415 396 aa8.83□□□□□ -1
USP3-201ENST00000268049 KRT85P78386 507 aa8.83□□□□□ -1
USP3-201ENST00000268049 RUFY4Q6ZNE9 571 aa8.83□□□□□ -1
USP3-201ENST00000268049 SSH2Q76I76 1423 aa8.83□□□□□ -1
USP3-201ENST00000268049 ECHDC1Q9NTX5 307 aa8.83□□□□□ -1
USP3-201ENST00000268049 MAP3K15Q6ZN16 1313 aa8.83□□□□□ -1
USP3-201ENST00000268049 UTP14CQ5TAP6 766 aaKnown RBP8.83□□□□□ -1
USP3-201ENST00000268049 USP19O94966 1318 aa8.83□□□□□ -1
USP3-201ENST00000268049 IQGAP1P46940 1657 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms