RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 INTS4Q96HW7 963 aaKnown RBP9.79□□□□□ -0.84
PTCD3-201ENST00000254630 IFNKQ9P0W0 207 aa9.79□□□□□ -0.84
PTCD3-201ENST00000254630 NIM1KQ8IY84 436 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 SYNMO15061 1565 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 GPAA1O43292 621 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 PDE4DQ08499 809 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 KDRP35968 1356 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 ALDH1B1P30837 517 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 GTF2F1P35269 517 aaKnown RBP eCLIP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 MXRA7P84157 204 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 ASIC2Q16515 512 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 USH1GQ495M9 461 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 FCHSD1Q86WN1 690 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 NOC4LQ9BVI4 516 aaKnown RBP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 SNX14Q9Y5W7 946 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 ZCCHC11Q5TAX3 1644 aaKnown RBP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 GAS8O95995 478 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 TIMM10P62072 90 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 CFAP58Q5T655 872 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 GLT8D2Q9H1C3 349 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 GUCA1BQ9UMX6 200 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 NOP56O00567 594 aaKnown RBP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 APBA3O96018 575 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 SMC5Q8IY18 1101 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 LLPHQ9BRT6 129 aaKnown RBP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 AGTPBP1Q9UPW5 1226 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.78□□□□□ -0.848e-6■□□□□ 8.1
PTCD3-201ENST00000254630 A1BGP04217 495 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 ATP2A2P16615 1042 aaKnown RBP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 CTSWP56202 376 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 NOLC1Q14978 699 aaKnown RBP eCLIP9.78□□□□□ -0.841e-323■■■■■ 29.3
PTCD3-201ENST00000254630 ZNF569Q5MCW4 686 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC117Q8IWD4 279 aaPredicted RBP9.78□□□□□ -0.84
PTCD3-201ENST00000254630 KLHDC4Q8TBB5 520 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 DBNDD2Q9BQY9 259 aa9.78□□□□□ -0.84
PTCD3-201ENST00000254630 CHD1O14646 1710 aa9.77□□□□□ -0.84
PTCD3-201ENST00000254630 BIRC3Q13489 604 aa9.77□□□□□ -0.84
PTCD3-201ENST00000254630 CCDC14Q49A88 953 aa9.77□□□□□ -0.84
PTCD3-201ENST00000254630 LZTS2Q9BRK4 669 aa9.77□□□□□ -0.84
PTCD3-201ENST00000254630 FAM135BQ49AJ0 1406 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 KRT9P35527 623 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 PDE6BP35913 854 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 SYNRGQ9UMZ2 1314 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 DYNC1I1O14576 645 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 DKC1O60832 514 aaKnown RBP eCLIP9.77□□□□□ -0.851e-323■■□□□ 12
PTCD3-201ENST00000254630 TGFBRAP1Q8WUH2 860 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 ATP6V0A2Q9Y487 856 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 ERVV-2B6SEH9 535 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 TUBB4AP04350 444 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 CPA1P15085 419 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 PLCB3Q01970 1234 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 PROCA1Q8NCQ7 364 aaPredicted RBP9.77□□□□□ -0.85
PTCD3-201ENST00000254630 CALCOCO1Q9P1Z2 691 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 ZNF532Q9HCE3 1301 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 BLMP54132 1417 aaPredicted RBP9.77□□□□□ -0.85
PTCD3-201ENST00000254630 A0A1B0GVL5 298 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 AKR1B15C9JRZ8 316 aaPredicted RBP9.77□□□□□ -0.85
PTCD3-201ENST00000254630 TTC38Q5R3I4 469 aa9.77□□□□□ -0.85
PTCD3-201ENST00000254630 KIF24Q5T7B8 1368 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TCP10Q12799 353 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TRIM14Q14142 442 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 RAB3IL1Q8TBN0 382 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 GPHNQ9NQX3 736 aaPredicted RBP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 EFCAB6Q5THR3 1501 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 ARHGEF35A5YM69 484 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TRPC3Q13507 836 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 VWA3BQ502W6 1294 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 BRDTQ58F21 947 aaPredicted RBP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 RILPL1Q5EBL4 403 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 ANO1Q5XXA6 986 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 FAM227BQ96M60 508 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 SRRTQ9BXP5 876 aaKnown RBP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 LZTFL1Q9NQ48 299 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 NOD1Q9Y239 953 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 IBTKQ9P2D0 1353 aaPredicted RBP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TRAF5O00463 557 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TXKP42681 527 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 NDC80O14777 642 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TNFAIP3P21580 790 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 CALCRLQ16602 461 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 CCDC24Q8N4L8 307 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 ANGEL1Q9UNK9 670 aaKnown RBP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 ATP2C2O75185 946 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 KRT25Q7Z3Z0 450 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 CNGA4Q8IV77 575 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TRIM35Q9UPQ4 493 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 V9GY48 417 aaPredicted RBP9.76□□□□□ -0.85
PTCD3-201ENST00000254630 TMEM2Q9UHN6 1383 aa9.76□□□□□ -0.85
PTCD3-201ENST00000254630 FAM160A1Q05DH4 1040 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 LIN9Q5TKA1 542 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 MAPKAPK5Q8IW41 473 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 RNF34Q969K3 372 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 MTUS1Q9ULD2 1270 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 IVNS1ABPQ9Y6Y0 642 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 STX10O60499 249 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 SLC8A3P57103 927 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 PRKG1Q13976 671 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 SAMD9LQ8IVG5 1584 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 HECW2Q9P2P5 1572 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms