RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 DNAJC10Q8IXB1 793 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 SPC25Q9HBM1 224 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 RXRBP28702 533 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 PPP2R5AQ15172 486 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 KIAA0753Q2KHM9 967 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 GRIPAP1Q4V328 841 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 TMC6Q7Z403 805 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 KBTBD3Q8NAB2 608 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 SRRTQ9BXP5 876 aaKnown RBP14.33□□□□□ -0.12
USP40-201ENST00000251722 TFIP11Q9UBB9 837 aaKnown RBP14.33□□□□□ -0.12
USP40-201ENST00000251722 ERVK-7P63135 1459 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 PREX2Q70Z35 1606 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 CEP128Q6ZU80 1094 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 SPATA5Q8NB90 893 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 HELBQ8NG08 1087 aaPredicted RBP14.33□□□□□ -0.12
USP40-201ENST00000251722 TMX1Q9H3N1 280 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 NOD1Q9Y239 953 aa14.33□□□□□ -0.12
USP40-201ENST00000251722 PCCAP05165 728 aaPredicted RBP14.32□□□□□ -0.12
USP40-201ENST00000251722 SH2D4BQ5SQS7 431 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 OTUD7BQ6GQQ9 843 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 KIAA1524Q8TCG1 905 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 CTSWP56202 376 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 MKRN1Q9UHC7 482 aaKnown RBP14.32□□□□□ -0.12
USP40-201ENST00000251722 ATP2A1O14983 1001 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 PPIP5K2O43314 1243 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 DNAJC21Q5F1R6 531 aaKnown RBP14.32□□□□□ -0.12
USP40-201ENST00000251722 OTUD6BQ8N6M0 293 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 C16orf45Q96MC5 204 aaPredicted RBP14.32□□□□□ -0.12
USP40-201ENST00000251722 HAUS2Q9NVX0 235 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 FRMD4BQ9Y2L6 1034 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 PER1O15534 1290 aaPredicted RBP14.32□□□□□ -0.12
USP40-201ENST00000251722 TAF12Q16514 161 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 IKBKGQ9Y6K9 419 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 NLRX1Q86UT6 975 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 KIFAP3Q92845 792 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 FAM184BQ9ULE4 1060 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 COMMD10Q9Y6G5 202 aa14.32□□□□□ -0.12
USP40-201ENST00000251722 ATP10DQ9P241 1426 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 DNM2P50570 870 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 MAP2K1Q02750 393 aaPredicted RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 RAB3GAP1Q15042 981 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 PTPDC1A2A3K4 754 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 M0QZ92 97 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 STMN4Q9H169 189 aaPredicted RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 ANGEL1Q9UNK9 670 aaKnown RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 PCDHB15Q9Y5E8 787 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 ZBTB7BO15156 539 aaPredicted RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 STX10O60499 249 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 TSPYL6Q8N831 410 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 CCDC77Q9BR77 488 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 DSCC1Q9BVC3 393 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 HCLS1P14317 486 aaPredicted RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 IL6STP40189 918 aaPredicted RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 UBASH3AP57075 661 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 PLEKHM2Q8IWE5 1019 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 ZBTB38Q8NAP3 1195 aaPredicted RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 AZI2Q9H6S1 392 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 ELP1O95163 1332 aa14.31□□□□□ -0.12
USP40-201ENST00000251722 ZCCHC11Q5TAX3 1644 aaKnown RBP14.31□□□□□ -0.12
USP40-201ENST00000251722 CALUO43852 315 aaPredicted RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 TACC1O75410 805 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 RLBP1P12271 317 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 FERP16591 822 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 LTKP29376 864 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 SLC4A8Q2Y0W8 1093 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 WDR44Q5JSH3 913 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 CNNM4Q6P4Q7 775 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 FAM200AQ8TCP9 573 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 IQCDQ96DY2 449 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 ERCC3P19447 782 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 ADCY7P51828 1080 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 TRIM14Q14142 442 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 LEMD3Q9Y2U8 911 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 MACROD2A1Z1Q3 448 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 URI1O94763 535 aaPredicted RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 EPB41P11171 864 aaKnown RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 RPS6KB1P23443 525 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 STRN3Q13033 797 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 ICE2Q659A1 982 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 NEK11Q8NG66 645 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 MBD5Q9P267 1494 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 ZMAT2Q96NC0 199 aaKnown RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 QTRT2Q9H974 415 aaKnown RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 H0YCG3 227 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 NOP56O00567 594 aaKnown RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 LPXNO60711 386 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 SLU7O95391 586 aaKnown RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 PPM1FP49593 454 aaPredicted RBP14.3□□□□□ -0.12
USP40-201ENST00000251722 DAAM2Q86T65 1068 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 IWS1Q96ST2 819 aa14.3□□□□□ -0.12
USP40-201ENST00000251722 TSHZ3Q63HK5 1081 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 SPECC1LQ69YQ0 1117 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 ARHGAP31Q2M1Z3 1444 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 ATP5JP18859 108 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 SLC1A4P43007 532 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 GALNT17Q6IS24 598 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 C2CD5Q86YS7 1000 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 TSGA10Q9BZW7 698 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 TTC37Q6PGP7 1564 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 SATB1Q01826 763 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms