RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeastyeast

Gene CUP9, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUP9YPL177C MAK11P20484 414 aaKnown RBP9.54□□□□□ -0.88
CUP9YPL177C PTC4P38089 393 aa9.53□□□□□ -0.88
CUP9YPL177C YDL129WQ07555 291 aa9.53□□□□□ -0.88
CUP9YPL177C SAP30P38429 201 aa9.52□□□□□ -0.89
CUP9YPL177C EDS1P38073 919 aa9.5□□□□□ -0.89
CUP9YPL177C GRE2Q12068 342 aaKnown RBP9.5□□□□□ -0.89
CUP9YPL177C MIF2P35201 549 aa9.47□□□□□ -0.89
CUP9YPL177C PTC3P34221 468 aaKnown RBP9.45□□□□□ -0.9
CUP9YPL177C CHL1P22516 861 aaPredicted RBP9.41□□□□□ -0.9
CUP9YPL177C GUT1P32190 709 aa9.41□□□□□ -0.9
CUP9YPL177C ATH1P48016 1211 aa9.41□□□□□ -0.9
CUP9YPL177C COQ8P27697 501 aa9.4□□□□□ -0.9
CUP9YPL177C PRE3P38624 215 aa9.4□□□□□ -0.9
CUP9YPL177C NST1P53935 1240 aa9.39□□□□□ -0.91
CUP9YPL177C BCK2P33306 851 aa9.36□□□□□ -0.91
CUP9YPL177C PML39Q03760 334 aa9.35□□□□□ -0.91
CUP9YPL177C YDR344CQ05510 147 aa9.35□□□□□ -0.91
CUP9YPL177C SOL3P38858 249 aa9.33□□□□□ -0.92
CUP9YPL177C AI4P03878 556 aa9.25□□□□□ -0.93
CUP9YPL177C MPH3P0CE00 602 aa9.25□□□□□ -0.93
CUP9YPL177C ILV3P39522 585 aaKnown RBP9.25□□□□□ -0.93
CUP9YPL177C MID1P41821 548 aa9.25□□□□□ -0.93
CUP9YPL177C NOP53Q12080 455 aaKnown RBP9.25□□□□□ -0.93
CUP9YPL177C ELP4Q02884 456 aaKnown RBP9.22□□□□□ -0.93
CUP9YPL177C ARH1P48360 493 aa9.21□□□□□ -0.94
CUP9YPL177C VRP1P37370 817 aa9.18□□□□□ -0.94
CUP9YPL177C YGR273CP53329 174 aa9.18□□□□□ -0.94
CUP9YPL177C XDJ1P39102 459 aa9.15□□□□□ -0.94
CUP9YPL177C PEX29Q03370 554 aa9.12□□□□□ -0.95
CUP9YPL177C SPT23P35210 1082 aa9.09□□□□□ -0.95
CUP9YPL177C HAP5Q02516 242 aa9.08□□□□□ -0.96
CUP9YPL177C MPC54Q08550 464 aa9.07□□□□□ -0.96
CUP9YPL177C SLI15P38283 698 aa9.04□□□□□ -0.96
CUP9YPL177C BNI4P53858 892 aa9.04□□□□□ -0.96
CUP9YPL177C SET1P38827 1080 aaKnown RBP8.99□□□□□ -0.97
CUP9YPL177C KEX1P09620 729 aa8.98□□□□□ -0.97
CUP9YPL177C YML082WQ04533 649 aaKnown RBP8.98□□□□□ -0.97
CUP9YPL177C NMA111P53920 997 aa8.97□□□□□ -0.97
CUP9YPL177C DPL1Q05567 589 aa8.97□□□□□ -0.97
CUP9YPL177C PTC2P39966 464 aaKnown RBP8.96□□□□□ -0.98
CUP9YPL177C DPS1P04802 557 aaKnown RBP8.95□□□□□ -0.98
CUP9YPL177C YLR326WQ06170 240 aaKnown RBP8.92□□□□□ -0.98
CUP9YPL177C UBP14P38237 781 aaKnown RBP8.91□□□□□ -0.98
CUP9YPL177C YPR015CQ12531 247 aa8.88□□□□□ -0.99
CUP9YPL177C VHR2P40041 505 aa8.87□□□□□ -0.99
CUP9YPL177C CDC73Q06697 393 aa8.87□□□□□ -0.99
CUP9YPL177C RAM1P22007 431 aa8.86□□□□□ -0.99
CUP9YPL177C ISU2Q12056 156 aa8.86□□□□□ -0.99
CUP9YPL177C PCS60P38137 543 aaKnown RBP RIP-Chip data8.84□□□□□ -0.99not detected
CUP9YPL177C RAD54P32863 898 aa8.8□□□□□ -1
CUP9YPL177C SRC1Q03707 834 aa8.8□□□□□ -1
CUP9YPL177C YDR090CQ03193 310 aa8.77□□□□□ -1.01
CUP9YPL177C PDR1P12383 1068 aa8.76□□□□□ -1.01
CUP9YPL177C IFH1P39520 1085 aa8.75□□□□□ -1.01
CUP9YPL177C YPR148CQ06523 435 aa8.74□□□□□ -1.01
CUP9YPL177C RAS1P01119 309 aa8.7□□□□□ -1.02
CUP9YPL177C RPP1BP10622 106 aaKnown RBP8.69□□□□□ -1.02
CUP9YPL177C GAP1P19145 602 aaPredicted RBP8.67□□□□□ -1.02
CUP9YPL177C GYP1Q08484 637 aa8.67□□□□□ -1.02
CUP9YPL177C SDH2P21801 266 aa8.66□□□□□ -1.02
CUP9YPL177C REF2P42073 533 aaPredicted RBP8.65□□□□□ -1.02
CUP9YPL177C KIC1P38692 1080 aa8.64□□□□□ -1.03
CUP9YPL177C AMS1P22855 1083 aa8.63□□□□□ -1.03
CUP9YPL177C SAS4Q04003 481 aa8.63□□□□□ -1.03
CUP9YPL177C YRR1Q12172 810 aa8.6□□□□□ -1.03
CUP9YPL177C ORC6P38826 435 aa8.59□□□□□ -1.03
CUP9YPL177C CSC1Q06538 782 aa8.59□□□□□ -1.03
CUP9YPL177C BUD20Q08004 166 aaPredicted RBP8.58□□□□□ -1.04
CUP9YPL177C TFB4Q12004 338 aa8.58□□□□□ -1.04
CUP9YPL177C STR2P47164 639 aa8.57□□□□□ -1.04
CUP9YPL177C PEX21P50091 288 aa8.57□□□□□ -1.04
CUP9YPL177C VPS70P47161 811 aa8.56□□□□□ -1.04
CUP9YPL177C ISM1P48526 1002 aa8.54□□□□□ -1.04
CUP9YPL177C TUM1Q08686 304 aaKnown RBP8.53□□□□□ -1.04
CUP9YPL177C COX6P00427 148 aa8.52□□□□□ -1.05
CUP9YPL177C PRT1P06103 763 aaKnown RBP8.52□□□□□ -1.05
CUP9YPL177C NUD1P32336 851 aa8.52□□□□□ -1.05
CUP9YPL177C MAK21Q12176 1025 aaKnown RBP8.52□□□□□ -1.05
CUP9YPL177C YEL077CQ3E7X8 1277 aa8.51□□□□□ -1.05
CUP9YPL177C TRK1P12685 1235 aa8.5□□□□□ -1.05
CUP9YPL177C MRF1P30775 413 aaPredicted RBP8.48□□□□□ -1.05
CUP9YPL177C MVP1P40959 511 aaKnown RBP8.46□□□□□ -1.06
CUP9YPL177C TY1A-DR4O74302 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-HP0C2I4 478 aaKnown RBP8.45□□□□□ -1.06
CUP9YPL177C TY1A-AP0CX57 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-PR1P0CX58 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-ORP0CX59 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-PR2P0CX60 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-DR5P0CX65 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-ER2P0CX66 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-GR3P0CX67 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-LR1P0CX68 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-MR2P0CX69 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-JR2P47099 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-DR1Q03856 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-ML1Q04706 440 aaKnown RBP8.45□□□□□ -1.06
CUP9YPL177C TY1A-BRQ12217 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-NL2Q12470 440 aa8.45□□□□□ -1.06
CUP9YPL177C TY1A-GR2Q12485 440 aa8.45□□□□□ -1.06
CUP9YPL177C RGR1P19263 1082 aa8.42□□□□□ -1.06
Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms