RNA–Protein interactions for RNA: YMR048W

CSM3, Transcript of Replication fork associated factor, yeastyeast

Gene CSM3, Length 954 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CSM3YMR048W PTC3P34221 468 aaKnown RBP10.06□□□□□ -0.8
CSM3YMR048W NCR1Q12200 1170 aa10.06□□□□□ -0.8
CSM3YMR048W NOP53Q12080 455 aaKnown RBP10.04□□□□□ -0.8
CSM3YMR048W BMT6Q12291 365 aa10.03□□□□□ -0.8
CSM3YMR048W GUT1P32190 709 aa10.02□□□□□ -0.81
CSM3YMR048W ATH1P48016 1211 aa10.02□□□□□ -0.81
CSM3YMR048W PTC4P38089 393 aa10□□□□□ -0.81
CSM3YMR048W TFG1P41895 735 aaPredicted RBP10□□□□□ -0.81
CSM3YMR048W DAN4P47179 1161 aa10□□□□□ -0.81
CSM3YMR048W YEL023CP39992 682 aa9.99□□□□□ -0.81
CSM3YMR048W YDL129WQ07555 291 aa9.89□□□□□ -0.83
CSM3YMR048W SET1P38827 1080 aaKnown RBP9.86□□□□□ -0.83
CSM3YMR048W NST1P53935 1240 aa9.85□□□□□ -0.83
CSM3YMR048W SAP30P38429 201 aa9.83□□□□□ -0.84
CSM3YMR048W SOL3P38858 249 aa9.83□□□□□ -0.84
CSM3YMR048W AI4P03878 556 aa9.8□□□□□ -0.84
CSM3YMR048W MPH3P0CE00 602 aa9.79□□□□□ -0.84
CSM3YMR048W YGR273CP53329 174 aa9.78□□□□□ -0.84
CSM3YMR048W PML39Q03760 334 aa9.78□□□□□ -0.84
CSM3YMR048W IFH1P39520 1085 aa9.73□□□□□ -0.85
CSM3YMR048W CHL1P22516 861 aaPredicted RBP9.71□□□□□ -0.86
CSM3YMR048W PRE3P38624 215 aa9.7□□□□□ -0.86
CSM3YMR048W ILV3P39522 585 aaKnown RBP9.68□□□□□ -0.86
CSM3YMR048W MID1P41821 548 aa9.66□□□□□ -0.86
CSM3YMR048W ARH1P48360 493 aa9.62□□□□□ -0.87
CSM3YMR048W PEX29Q03370 554 aa9.62□□□□□ -0.87
CSM3YMR048W YPR148CQ06523 435 aa9.62□□□□□ -0.87
CSM3YMR048W KEX1P09620 729 aa9.61□□□□□ -0.87
CSM3YMR048W ELP4Q02884 456 aaKnown RBP9.61□□□□□ -0.87
CSM3YMR048W UBP14P38237 781 aaKnown RBP9.58□□□□□ -0.88
CSM3YMR048W SLI15P38283 698 aa9.58□□□□□ -0.88
CSM3YMR048W YDR344CQ05510 147 aa9.57□□□□□ -0.88
CSM3YMR048W YLR326WQ06170 240 aaKnown RBP9.57□□□□□ -0.88
CSM3YMR048W BCK2P33306 851 aa9.56□□□□□ -0.88
CSM3YMR048W VHR2P40041 505 aa9.55□□□□□ -0.88
CSM3YMR048W MPC54Q08550 464 aa9.54□□□□□ -0.88
CSM3YMR048W HAP5Q02516 242 aa9.53□□□□□ -0.88
CSM3YMR048W SPT23P35210 1082 aa9.52□□□□□ -0.89
CSM3YMR048W DPL1Q05567 589 aa9.51□□□□□ -0.89
CSM3YMR048W RAD54P32863 898 aa9.5□□□□□ -0.89
CSM3YMR048W REF2P42073 533 aaPredicted RBP9.5□□□□□ -0.89
CSM3YMR048W DMA1P38823 416 aa9.49□□□□□ -0.89
CSM3YMR048W PCS60P38137 543 aaKnown RBP RIP-Chip data9.48□□□□□ -0.89not detected
CSM3YMR048W VPS70P47161 811 aa9.48□□□□□ -0.89
CSM3YMR048W BNI4P53858 892 aa9.48□□□□□ -0.89
CSM3YMR048W NMA111P53920 997 aa9.47□□□□□ -0.89
CSM3YMR048W RPP1BP10622 106 aaKnown RBP9.44□□□□□ -0.9
CSM3YMR048W VRP1P37370 817 aa9.44□□□□□ -0.9
CSM3YMR048W KIC1P38692 1080 aa9.44□□□□□ -0.9
CSM3YMR048W YDR090CQ03193 310 aa9.44□□□□□ -0.9
CSM3YMR048W ISU2Q12056 156 aa9.43□□□□□ -0.9
CSM3YMR048W XDJ1P39102 459 aa9.41□□□□□ -0.9
CSM3YMR048W PTC2P39966 464 aaKnown RBP9.41□□□□□ -0.9
CSM3YMR048W CDC73Q06697 393 aa9.41□□□□□ -0.9
CSM3YMR048W MAK21Q12176 1025 aaKnown RBP9.41□□□□□ -0.9
CSM3YMR048W YML082WQ04533 649 aaKnown RBP9.4□□□□□ -0.9
CSM3YMR048W CKB1P43639 278 aa9.39□□□□□ -0.91
CSM3YMR048W COX6P00427 148 aa9.36□□□□□ -0.91
CSM3YMR048W SAS10Q12136 610 aaPredicted RBP9.35□□□□□ -0.91
CSM3YMR048W CSC1Q06538 782 aa9.29□□□□□ -0.92
CSM3YMR048W GAP1P19145 602 aaPredicted RBP9.28□□□□□ -0.92
CSM3YMR048W PBS2P08018 668 aa9.27□□□□□ -0.93
CSM3YMR048W RAM1P22007 431 aa9.26□□□□□ -0.93
CSM3YMR048W PEX21P50091 288 aa9.26□□□□□ -0.93
CSM3YMR048W TFB4Q12004 338 aa9.26□□□□□ -0.93
CSM3YMR048W RQC2Q12532 1038 aaKnown RBP9.25□□□□□ -0.93
CSM3YMR048W ORC6P38826 435 aa9.24□□□□□ -0.93
CSM3YMR048W YPR015CQ12531 247 aa9.22□□□□□ -0.93
CSM3YMR048W PDR1P12383 1068 aa9.21□□□□□ -0.94
CSM3YMR048W YRR1Q12172 810 aa9.19□□□□□ -0.94
CSM3YMR048W DSF2P38213 736 aa9.17□□□□□ -0.94
CSM3YMR048W TUM1Q08686 304 aaKnown RBP9.17□□□□□ -0.94
CSM3YMR048W MVP1P40959 511 aaKnown RBP9.16□□□□□ -0.94
CSM3YMR048W MAM3Q12296 706 aa9.16□□□□□ -0.94
CSM3YMR048W DPS1P04802 557 aaKnown RBP9.15□□□□□ -0.94
CSM3YMR048W SAS4Q04003 481 aa9.14□□□□□ -0.95
CSM3YMR048W GYP1Q08484 637 aa9.14□□□□□ -0.95
CSM3YMR048W RGR1P19263 1082 aa9.13□□□□□ -0.95
CSM3YMR048W SPB4P25808 606 aaPredicted RBP9.1□□□□□ -0.95
CSM3YMR048W NUD1P32336 851 aa9.1□□□□□ -0.95
CSM3YMR048W PSE1P32337 1089 aaKnown RBP9.1□□□□□ -0.95
CSM3YMR048W YPR109WQ06104 294 aa9.09□□□□□ -0.95
CSM3YMR048W BUD20Q08004 166 aaPredicted RBP9.08□□□□□ -0.96
CSM3YMR048W NPL4P33755 580 aa9.07□□□□□ -0.96
CSM3YMR048W IES2P40154 320 aa9.07□□□□□ -0.96
CSM3YMR048W STR2P47164 639 aa9.07□□□□□ -0.96
CSM3YMR048W ISM1P48526 1002 aa9.06□□□□□ -0.96
CSM3YMR048W PRT1P06103 763 aaKnown RBP9.05□□□□□ -0.96
CSM3YMR048W CLB5P30283 435 aa9.03□□□□□ -0.96
CSM3YMR048W MRF1P30775 413 aaPredicted RBP9.02□□□□□ -0.97
CSM3YMR048W NUP42P49686 430 aaKnown RBP9.02□□□□□ -0.97
CSM3YMR048W GCD11P32481 527 aaKnown RBP8.98□□□□□ -0.97
CSM3YMR048W AMS1P22855 1083 aa8.97□□□□□ -0.97
CSM3YMR048W SDH2P21801 266 aa8.96□□□□□ -0.98
CSM3YMR048W YEL077CQ3E7X8 1277 aa8.96□□□□□ -0.98
CSM3YMR048W TY1A-DR4O74302 440 aa8.94□□□□□ -0.98
CSM3YMR048W RAS1P01119 309 aa8.94□□□□□ -0.98
CSM3YMR048W TY1A-HP0C2I4 478 aaKnown RBP8.94□□□□□ -0.98
CSM3YMR048W TY1A-AP0CX57 440 aa8.94□□□□□ -0.98
CSM3YMR048W TY1A-PR1P0CX58 440 aa8.94□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 42.7 ms