RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeastyeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS38YLR360W NOP53Q12080 455 aaKnown RBP8.01□□□□□ -1.13
VPS38YLR360W NCR1Q12200 1170 aa8.01□□□□□ -1.13
VPS38YLR360W DCW1P36091 449 aa7.99□□□□□ -1.13
VPS38YLR360W SEC61P32915 480 aa7.97□□□□□ -1.13
VPS38YLR360W GUT1P32190 709 aa7.96□□□□□ -1.14
VPS38YLR360W IFH1P39520 1085 aa7.96□□□□□ -1.14
VPS38YLR360W ABP1P15891 592 aaKnown RBP7.95□□□□□ -1.14
VPS38YLR360W VPS70P47161 811 aa7.94□□□□□ -1.14
VPS38YLR360W HTA1P04911 132 aaKnown RBP7.93□□□□□ -1.14
VPS38YLR360W HTA2P04912 132 aa7.93□□□□□ -1.14
VPS38YLR360W DAN4P47179 1161 aa7.93□□□□□ -1.14
VPS38YLR360W SAS10Q12136 610 aaPredicted RBP7.91□□□□□ -1.14
VPS38YLR360W JIP4Q03361 876 aa7.9□□□□□ -1.14
VPS38YLR360W YPR148CQ06523 435 aa7.9□□□□□ -1.14
VPS38YLR360W TFG1P41895 735 aaPredicted RBP7.88□□□□□ -1.15
VPS38YLR360W YEL023CP39992 682 aa7.87□□□□□ -1.15
VPS38YLR360W SAP30P38429 201 aa7.86□□□□□ -1.15
VPS38YLR360W PTC4P38089 393 aa7.84□□□□□ -1.15
VPS38YLR360W SOL3P38858 249 aa7.83□□□□□ -1.16
VPS38YLR360W YGR273CP53329 174 aa7.82□□□□□ -1.16
VPS38YLR360W YDL129WQ07555 291 aa7.82□□□□□ -1.16
VPS38YLR360W CKB1P43639 278 aa7.8□□□□□ -1.16
VPS38YLR360W VHR2P40041 505 aa7.79□□□□□ -1.16
VPS38YLR360W REF2P42073 533 aaPredicted RBP7.78□□□□□ -1.16
VPS38YLR360W NST1P53935 1240 aa7.77□□□□□ -1.17
VPS38YLR360W MPH3P0CE00 602 aa7.75□□□□□ -1.17
VPS38YLR360W SPB4P25808 606 aaPredicted RBP7.75□□□□□ -1.17
VPS38YLR360W UBP14P38237 781 aaKnown RBP7.75□□□□□ -1.17
VPS38YLR360W AI4P03878 556 aa7.74□□□□□ -1.17
VPS38YLR360W KEX1P09620 729 aa7.73□□□□□ -1.17
VPS38YLR360W PML39Q03760 334 aa7.73□□□□□ -1.17
VPS38YLR360W YLR326WQ06170 240 aaKnown RBP7.73□□□□□ -1.17
VPS38YLR360W PBS2P08018 668 aa7.72□□□□□ -1.17
VPS38YLR360W CHL1P22516 861 aaPredicted RBP7.72□□□□□ -1.17
VPS38YLR360W YDR344CQ05510 147 aa7.72□□□□□ -1.17
VPS38YLR360W PRE3P38624 215 aa7.71□□□□□ -1.18
VPS38YLR360W ILV3P39522 585 aaKnown RBP7.71□□□□□ -1.18
VPS38YLR360W KIC1P38692 1080 aa7.69□□□□□ -1.18
VPS38YLR360W RAD54P32863 898 aa7.68□□□□□ -1.18
VPS38YLR360W YDR090CQ03193 310 aa7.67□□□□□ -1.18
VPS38YLR360W COX6P00427 148 aa7.66□□□□□ -1.18
VPS38YLR360W BCK2P33306 851 aa7.66□□□□□ -1.18
VPS38YLR360W PCS60P38137 543 aaKnown RBP RIP-Chip data7.66□□□□□ -1.18not detected
VPS38YLR360W MID1P41821 548 aa7.66□□□□□ -1.18
VPS38YLR360W SLI15P38283 698 aa7.65□□□□□ -1.18
VPS38YLR360W MAK21Q12176 1025 aaKnown RBP7.65□□□□□ -1.18
VPS38YLR360W DSF2P38213 736 aa7.62□□□□□ -1.19
VPS38YLR360W ELP4Q02884 456 aaKnown RBP7.62□□□□□ -1.19
VPS38YLR360W MAM3Q12296 706 aa7.62□□□□□ -1.19
VPS38YLR360W PEX29Q03370 554 aa7.61□□□□□ -1.19
VPS38YLR360W IES2P40154 320 aa7.57□□□□□ -1.2
VPS38YLR360W VRP1P37370 817 aa7.56□□□□□ -1.2
VPS38YLR360W ARH1P48360 493 aa7.56□□□□□ -1.2
VPS38YLR360W CDC73Q06697 393 aa7.55□□□□□ -1.2
VPS38YLR360W RPP1BP10622 106 aaKnown RBP7.54□□□□□ -1.2
VPS38YLR360W MPC54Q08550 464 aa7.54□□□□□ -1.2
VPS38YLR360W DPL1Q05567 589 aa7.52□□□□□ -1.2
VPS38YLR360W LEU3P08638 886 aa7.52□□□□□ -1.21
VPS38YLR360W DIT2P21595 489 aa7.5□□□□□ -1.21
VPS38YLR360W NUP42P49686 430 aaKnown RBP7.5□□□□□ -1.21
VPS38YLR360W NMA111P53920 997 aa7.5□□□□□ -1.21
VPS38YLR360W ORC6P38826 435 aa7.49□□□□□ -1.21
VPS38YLR360W XDJ1P39102 459 aa7.49□□□□□ -1.21
VPS38YLR360W PEX21P50091 288 aa7.48□□□□□ -1.21
VPS38YLR360W SPT23P35210 1082 aa7.47□□□□□ -1.21
VPS38YLR360W HAP5Q02516 242 aa7.47□□□□□ -1.21
VPS38YLR360W CSC1Q06538 782 aa7.46□□□□□ -1.22
VPS38YLR360W ISU2Q12056 156 aa7.46□□□□□ -1.22
VPS38YLR360W PSE1P32337 1089 aaKnown RBP7.44□□□□□ -1.22
VPS38YLR360W MVP1P40959 511 aaKnown RBP7.43□□□□□ -1.22
VPS38YLR360W GAP1P19145 602 aaPredicted RBP7.42□□□□□ -1.22
VPS38YLR360W RGR1P19263 1082 aa7.42□□□□□ -1.22
VPS38YLR360W YNR021WP53723 404 aaKnown RBP7.42□□□□□ -1.22
VPS38YLR360W GLC3P32775 704 aa7.41□□□□□ -1.22
VPS38YLR360W BNI4P53858 892 aa7.41□□□□□ -1.22
VPS38YLR360W TUM1Q08686 304 aaKnown RBP7.41□□□□□ -1.22
VPS38YLR360W TFB4Q12004 338 aa7.41□□□□□ -1.22
VPS38YLR360W YRR1Q12172 810 aa7.41□□□□□ -1.22
VPS38YLR360W ATF2P53296 535 aa7.4□□□□□ -1.22
VPS38YLR360W YPR109WQ06104 294 aa7.4□□□□□ -1.22
VPS38YLR360W PTC2P39966 464 aaKnown RBP7.39□□□□□ -1.23
VPS38YLR360W RPN1P38764 993 aaKnown RBP7.38□□□□□ -1.23
VPS38YLR360W YML082WQ04533 649 aaKnown RBP7.36□□□□□ -1.23
VPS38YLR360W PDR1P12383 1068 aa7.35□□□□□ -1.23
VPS38YLR360W TEA1P47988 759 aa7.35□□□□□ -1.23
VPS38YLR360W DPS1P04802 557 aaKnown RBP7.34□□□□□ -1.23
VPS38YLR360W CLB5P30283 435 aa7.31□□□□□ -1.24
VPS38YLR360W AIM7Q12156 149 aa7.31□□□□□ -1.24
VPS38YLR360W LEO1P38439 464 aa7.3□□□□□ -1.24
VPS38YLR360W YPR015CQ12531 247 aa7.3□□□□□ -1.24
VPS38YLR360W NUD1P32336 851 aa7.29□□□□□ -1.24
VPS38YLR360W KIN1P13185 1064 aa7.28□□□□□ -1.24
VPS38YLR360W NPL4P33755 580 aa7.28□□□□□ -1.24
VPS38YLR360W RAM1P22007 431 aa7.27□□□□□ -1.24
VPS38YLR360W ISM1P48526 1002 aa7.25□□□□□ -1.25
VPS38YLR360W NIS1P53939 407 aa7.25□□□□□ -1.25
VPS38YLR360W STR2P47164 639 aa7.24□□□□□ -1.25
VPS38YLR360W YMR196WQ04336 1088 aa7.24□□□□□ -1.25
VPS38YLR360W GCD11P32481 527 aaKnown RBP7.23□□□□□ -1.25
VPS38YLR360W FPK1P53739 893 aa7.22□□□□□ -1.25
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms