RNA–Protein interactions for RNA: YKL184W

SPE1, Transcript of Ornithine decarboxylase, yeast

Gene SPE1, Length 1,401 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPE1	YKL184W	TFG1	P41895	735 aa	Predicted RBP	6.36	□□□□□ -1.39
SPE1	YKL184W	YNL035C	P53962	389 aa	Known RBP	6.36	□□□□□ -1.39
SPE1	YKL184W	JIP4	Q03361	876 aa		6.36	□□□□□ -1.39
SPE1	YKL184W	RTG1	P32607	177 aa		6.35	□□□□□ -1.39
SPE1	YKL184W	DMA1	P38823	416 aa		6.35	□□□□□ -1.39
SPE1	YKL184W	YEL023C	P39992	682 aa		6.34	□□□□□ -1.39
SPE1	YKL184W	SEC61	P32915	480 aa		6.33	□□□□□ -1.4
SPE1	YKL184W	PTC4	P38089	393 aa		6.33	□□□□□ -1.4
SPE1	YKL184W	IFH1	P39520	1085 aa		6.33	□□□□□ -1.4
SPE1	YKL184W	FKH1	P40466	484 aa		6.33	□□□□□ -1.4
SPE1	YKL184W	NCR1	Q12200	1170 aa		6.33	□□□□□ -1.4
SPE1	YKL184W	AIR2	Q12476	344 aa	Known RBP	6.31	□□□□□ -1.4
SPE1	YKL184W	DAN4	P47179	1161 aa		6.27	□□□□□ -1.41
SPE1	YKL184W	BMT6	Q12291	365 aa		6.27	□□□□□ -1.41
SPE1	YKL184W	YGR273C	P53329	174 aa		6.24	□□□□□ -1.41
SPE1	YKL184W	YDL129W	Q07555	291 aa		6.23	□□□□□ -1.41
SPE1	YKL184W	AI4	P03878	556 aa		6.21	□□□□□ -1.42
SPE1	YKL184W	MPH3	P0CE00	602 aa		6.21	□□□□□ -1.42
SPE1	YKL184W	SOL3	P38858	249 aa		6.21	□□□□□ -1.42
SPE1	YKL184W	SAP30	P38429	201 aa		6.2	□□□□□ -1.42
SPE1	YKL184W	VPS70	P47161	811 aa		6.2	□□□□□ -1.42
SPE1	YKL184W	PML39	Q03760	334 aa		6.2	□□□□□ -1.42
SPE1	YKL184W	YPR148C	Q06523	435 aa		6.19	□□□□□ -1.42
SPE1	YKL184W	NST1	P53935	1240 aa		6.17	□□□□□ -1.42
SPE1	YKL184W	VHR2	P40041	505 aa		6.16	□□□□□ -1.42
SPE1	YKL184W	CKB1	P43639	278 aa		6.16	□□□□□ -1.42
SPE1	YKL184W	PEX29	Q03370	554 aa		6.16	□□□□□ -1.42
SPE1	YKL184W	REF2	P42073	533 aa	Predicted RBP	6.15	□□□□□ -1.43
SPE1	YKL184W	KEX1	P09620	729 aa		6.14	□□□□□ -1.43
SPE1	YKL184W	KIC1	P38692	1080 aa		6.14	□□□□□ -1.43
SPE1	YKL184W	UBP14	P38237	781 aa	Known RBP	6.12	□□□□□ -1.43
SPE1	YKL184W	MID1	P41821	548 aa		6.12	□□□□□ -1.43
SPE1	YKL184W	SAS10	Q12136	610 aa	Predicted RBP	6.12	□□□□□ -1.43
SPE1	YKL184W	RAD54	P32863	898 aa		6.11	□□□□□ -1.43
SPE1	YKL184W	RPP1B	P10622	106 aa	Known RBP	6.1	□□□□□ -1.43
SPE1	YKL184W	ILV3	P39522	585 aa	Known RBP	6.1	□□□□□ -1.43
SPE1	YKL184W	ELP4	Q02884	456 aa	Known RBP	6.1	□□□□□ -1.43
SPE1	YKL184W	YLR326W	Q06170	240 aa	Known RBP	6.1	□□□□□ -1.43
SPE1	YKL184W	CHL1	P22516	861 aa	Predicted RBP	6.09	□□□□□ -1.43
SPE1	YKL184W	SLI15	P38283	698 aa		6.09	□□□□□ -1.43
SPE1	YKL184W	MAK21	Q12176	1025 aa	Known RBP	6.09	□□□□□ -1.43
SPE1	YKL184W	PRE3	P38624	215 aa		6.08	□□□□□ -1.44
SPE1	YKL184W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	6.07	□□□□□ -1.44	not detected
SPE1	YKL184W	SPB4	P25808	606 aa	Predicted RBP	6.06	□□□□□ -1.44
SPE1	YKL184W	ARH1	P48360	493 aa		6.06	□□□□□ -1.44
SPE1	YKL184W	COX6	P00427	148 aa		6.05	□□□□□ -1.44
SPE1	YKL184W	PBS2	P08018	668 aa		6.05	□□□□□ -1.44
SPE1	YKL184W	DPL1	Q05567	589 aa		6.05	□□□□□ -1.44
SPE1	YKL184W	MPC54	Q08550	464 aa		6.05	□□□□□ -1.44
SPE1	YKL184W	HAP5	Q02516	242 aa		6.04	□□□□□ -1.44
SPE1	YKL184W	YDR090C	Q03193	310 aa		6.04	□□□□□ -1.44
SPE1	YKL184W	NMA111	P53920	997 aa		6.03	□□□□□ -1.44
SPE1	YKL184W	SPT23	P35210	1082 aa		6	□□□□□ -1.45
SPE1	YKL184W	PEX21	P50091	288 aa		6	□□□□□ -1.45
SPE1	YKL184W	ISU2	Q12056	156 aa		6	□□□□□ -1.45
SPE1	YKL184W	CDC73	Q06697	393 aa		5.99	□□□□□ -1.45
SPE1	YKL184W	MAM3	Q12296	706 aa		5.99	□□□□□ -1.45
SPE1	YKL184W	BNI4	P53858	892 aa		5.98	□□□□□ -1.45
SPE1	YKL184W	BCK2	P33306	851 aa		5.97	□□□□□ -1.45
SPE1	YKL184W	PTC2	P39966	464 aa	Known RBP	5.97	□□□□□ -1.45
SPE1	YKL184W	YDR344C	Q05510	147 aa		5.97	□□□□□ -1.45
SPE1	YKL184W	DSF2	P38213	736 aa		5.96	□□□□□ -1.46
SPE1	YKL184W	CSC1	Q06538	782 aa		5.96	□□□□□ -1.46
SPE1	YKL184W	VRP1	P37370	817 aa		5.94	□□□□□ -1.46
SPE1	YKL184W	TFB4	Q12004	338 aa		5.93	□□□□□ -1.46
SPE1	YKL184W	ORC6	P38826	435 aa		5.91	□□□□□ -1.46
SPE1	YKL184W	YML082W	Q04533	649 aa	Known RBP	5.91	□□□□□ -1.46
SPE1	YKL184W	IES2	P40154	320 aa		5.91	□□□□□ -1.46
SPE1	YKL184W	TUM1	Q08686	304 aa	Known RBP	5.91	□□□□□ -1.46
SPE1	YKL184W	YRR1	Q12172	810 aa		5.9	□□□□□ -1.47
SPE1	YKL184W	PSE1	P32337	1089 aa	Known RBP	5.89	□□□□□ -1.47
SPE1	YKL184W	MVP1	P40959	511 aa	Known RBP	5.89	□□□□□ -1.47
SPE1	YKL184W	GAP1	P19145	602 aa	Predicted RBP	5.88	□□□□□ -1.47
SPE1	YKL184W	NPL4	P33755	580 aa		5.87	□□□□□ -1.47
SPE1	YKL184W	RGR1	P19263	1082 aa		5.86	□□□□□ -1.47
SPE1	YKL184W	XDJ1	P39102	459 aa		5.86	□□□□□ -1.47
SPE1	YKL184W	PDR1	P12383	1068 aa		5.85	□□□□□ -1.47
SPE1	YKL184W	YPR109W	Q06104	294 aa		5.85	□□□□□ -1.47
SPE1	YKL184W	CLB5	P30283	435 aa		5.84	□□□□□ -1.47
SPE1	YKL184W	NUP42	P49686	430 aa	Known RBP	5.84	□□□□□ -1.47
SPE1	YKL184W	DIT2	P21595	489 aa		5.83	□□□□□ -1.48
SPE1	YKL184W	GYP1	Q08484	637 aa		5.83	□□□□□ -1.48
SPE1	YKL184W	NUD1	P32336	851 aa		5.82	□□□□□ -1.48
SPE1	YKL184W	TEA1	P47988	759 aa		5.82	□□□□□ -1.48
SPE1	YKL184W	ATF2	P53296	535 aa		5.82	□□□□□ -1.48
SPE1	YKL184W	RAM1	P22007	431 aa		5.81	□□□□□ -1.48
SPE1	YKL184W	SAS4	Q04003	481 aa		5.81	□□□□□ -1.48
SPE1	YKL184W	YNR021W	P53723	404 aa	Known RBP	5.79	□□□□□ -1.48
SPE1	YKL184W	YPR015C	Q12531	247 aa		5.79	□□□□□ -1.48
SPE1	YKL184W	PRT1	P06103	763 aa	Known RBP	5.78	□□□□□ -1.48
SPE1	YKL184W	GCD11	P32481	527 aa	Known RBP	5.78	□□□□□ -1.48
SPE1	YKL184W	LEU3	P08638	886 aa		5.77	□□□□□ -1.49
SPE1	YKL184W	ISM1	P48526	1002 aa		5.76	□□□□□ -1.49
SPE1	YKL184W	BUD20	Q08004	166 aa	Predicted RBP	5.76	□□□□□ -1.49
SPE1	YKL184W	MRF1	P30775	413 aa	Predicted RBP	5.75	□□□□□ -1.49
SPE1	YKL184W	STR2	P47164	639 aa		5.75	□□□□□ -1.49
SPE1	YKL184W	PAT1	P25644	796 aa	Known RBP	5.74	□□□□□ -1.49
SPE1	YKL184W	GLC3	P32775	704 aa		5.74	□□□□□ -1.49
SPE1	YKL184W	YMR196W	Q04336	1088 aa		5.74	□□□□□ -1.49
SPE1	YKL184W	DPS1	P04802	557 aa	Known RBP	5.73	□□□□□ -1.49

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms