RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W DAN4P47179 1161 aa8.36□□□□□ -1.07
RPF1YHR088W MIF2P35201 549 aa8.35□□□□□ -1.07
RPF1YHR088W DCW1P36091 449 aa8.35□□□□□ -1.07
RPF1YHR088W NOP53Q12080 455 aaKnown RBP8.34□□□□□ -1.07
RPF1YHR088W YEL023CP39992 682 aa8.33□□□□□ -1.08
RPF1YHR088W GUT1P32190 709 aa8.32□□□□□ -1.08
RPF1YHR088W PTC3P34221 468 aaKnown RBP8.31□□□□□ -1.08
RPF1YHR088W ATH1P48016 1211 aa8.31□□□□□ -1.08
RPF1YHR088W COQ8P27697 501 aa8.3□□□□□ -1.08
RPF1YHR088W YDL129WQ07555 291 aa8.29□□□□□ -1.08
RPF1YHR088W EDS1P38073 919 aa8.28□□□□□ -1.08
RPF1YHR088W SAP30P38429 201 aa8.23□□□□□ -1.09
RPF1YHR088W CHL1P22516 861 aaPredicted RBP8.19□□□□□ -1.1
RPF1YHR088W PRE3P38624 215 aa8.16□□□□□ -1.1
RPF1YHR088W AI4P03878 556 aa8.15□□□□□ -1.1
RPF1YHR088W NST1P53935 1240 aa8.15□□□□□ -1.1
RPF1YHR088W MPH3P0CE00 602 aa8.14□□□□□ -1.11
RPF1YHR088W PML39Q03760 334 aa8.14□□□□□ -1.11
RPF1YHR088W SOL3P38858 249 aa8.11□□□□□ -1.11
RPF1YHR088W YGR273CP53329 174 aa8.09□□□□□ -1.11
RPF1YHR088W BCK2P33306 851 aa8.08□□□□□ -1.12
RPF1YHR088W SET1P38827 1080 aaKnown RBP8.06□□□□□ -1.12
RPF1YHR088W ARH1P48360 493 aa8.05□□□□□ -1.12
RPF1YHR088W ELP4Q02884 456 aaKnown RBP8.04□□□□□ -1.12
RPF1YHR088W IFH1P39520 1085 aa8.02□□□□□ -1.13
RPF1YHR088W PEX29Q03370 554 aa8.02□□□□□ -1.13
RPF1YHR088W MID1P41821 548 aa8.01□□□□□ -1.13
RPF1YHR088W ILV3P39522 585 aaKnown RBP7.98□□□□□ -1.13
RPF1YHR088W SPT23P35210 1082 aa7.97□□□□□ -1.13
RPF1YHR088W HAP5Q02516 242 aa7.95□□□□□ -1.14
RPF1YHR088W XDJ1P39102 459 aa7.94□□□□□ -1.14
RPF1YHR088W VRP1P37370 817 aa7.93□□□□□ -1.14
RPF1YHR088W BNI4P53858 892 aa7.93□□□□□ -1.14
RPF1YHR088W KEX1P09620 729 aa7.92□□□□□ -1.14
RPF1YHR088W SLI15P38283 698 aa7.92□□□□□ -1.14
RPF1YHR088W YDR344CQ05510 147 aa7.92□□□□□ -1.14
RPF1YHR088W MPC54Q08550 464 aa7.92□□□□□ -1.14
RPF1YHR088W DPL1Q05567 589 aa7.9□□□□□ -1.14
RPF1YHR088W YML082WQ04533 649 aaKnown RBP7.88□□□□□ -1.15
RPF1YHR088W RPP1BP10622 106 aaKnown RBP7.87□□□□□ -1.15
RPF1YHR088W UBP14P38237 781 aaKnown RBP7.87□□□□□ -1.15
RPF1YHR088W NMA111P53920 997 aa7.87□□□□□ -1.15
RPF1YHR088W PTC2P39966 464 aaKnown RBP7.86□□□□□ -1.15
RPF1YHR088W YLR326WQ06170 240 aaKnown RBP7.86□□□□□ -1.15
RPF1YHR088W YPR148CQ06523 435 aa7.86□□□□□ -1.15
RPF1YHR088W ISU2Q12056 156 aa7.84□□□□□ -1.15
RPF1YHR088W RAD54P32863 898 aa7.83□□□□□ -1.16
RPF1YHR088W VHR2P40041 505 aa7.83□□□□□ -1.16
RPF1YHR088W PCS60P38137 543 aaKnown RBP RIP-Chip data7.79□□□□□ -1.16not detected
RPF1YHR088W KIC1P38692 1080 aa7.78□□□□□ -1.16
RPF1YHR088W REF2P42073 533 aaPredicted RBP7.78□□□□□ -1.16
RPF1YHR088W CDC73Q06697 393 aa7.75□□□□□ -1.17
RPF1YHR088W MAK21Q12176 1025 aaKnown RBP7.75□□□□□ -1.17
RPF1YHR088W YDR090CQ03193 310 aa7.74□□□□□ -1.17
RPF1YHR088W DPS1P04802 557 aaKnown RBP7.71□□□□□ -1.18
RPF1YHR088W VPS70P47161 811 aa7.7□□□□□ -1.18
RPF1YHR088W RAM1P22007 431 aa7.69□□□□□ -1.18
RPF1YHR088W CSC1Q06538 782 aa7.69□□□□□ -1.18
RPF1YHR088W CKB1P43639 278 aa7.68□□□□□ -1.18
RPF1YHR088W TFB4Q12004 338 aa7.68□□□□□ -1.18
RPF1YHR088W COX6P00427 148 aa7.67□□□□□ -1.18
RPF1YHR088W PEX21P50091 288 aa7.67□□□□□ -1.18
RPF1YHR088W SAS4Q04003 481 aa7.67□□□□□ -1.18
RPF1YHR088W GAP1P19145 602 aaPredicted RBP7.65□□□□□ -1.18
RPF1YHR088W YPR015CQ12531 247 aa7.64□□□□□ -1.19
RPF1YHR088W GYP1Q08484 637 aa7.63□□□□□ -1.19
RPF1YHR088W PDR1P12383 1068 aa7.6□□□□□ -1.19
RPF1YHR088W ORC6P38826 435 aa7.6□□□□□ -1.19
RPF1YHR088W YRR1Q12172 810 aa7.59□□□□□ -1.19
RPF1YHR088W MRF1P30775 413 aaPredicted RBP7.56□□□□□ -1.2
RPF1YHR088W SAS10Q12136 610 aaPredicted RBP7.56□□□□□ -1.2
RPF1YHR088W TUM1Q08686 304 aaKnown RBP7.55□□□□□ -1.2
RPF1YHR088W NPL4P33755 580 aa7.54□□□□□ -1.2
RPF1YHR088W PRT1P06103 763 aaKnown RBP7.53□□□□□ -1.2
RPF1YHR088W PBS2P08018 668 aa7.53□□□□□ -1.2
RPF1YHR088W AMS1P22855 1083 aa7.53□□□□□ -1.2
RPF1YHR088W DMA1P38823 416 aa7.53□□□□□ -1.2
RPF1YHR088W MVP1P40959 511 aaKnown RBP7.53□□□□□ -1.2
RPF1YHR088W NUD1P32336 851 aa7.52□□□□□ -1.21
RPF1YHR088W BUD20Q08004 166 aaPredicted RBP7.51□□□□□ -1.21
RPF1YHR088W YEL077CQ3E7X8 1277 aa7.51□□□□□ -1.21
RPF1YHR088W RGR1P19263 1082 aa7.49□□□□□ -1.21
RPF1YHR088W PSE1P32337 1089 aaKnown RBP7.49□□□□□ -1.21
RPF1YHR088W STR2P47164 639 aa7.49□□□□□ -1.21
RPF1YHR088W ISM1P48526 1002 aa7.48□□□□□ -1.21
RPF1YHR088W RAS1P01119 309 aa7.47□□□□□ -1.21
RPF1YHR088W SRC1Q03707 834 aa7.47□□□□□ -1.21
RPF1YHR088W MAM3Q12296 706 aa7.47□□□□□ -1.21
RPF1YHR088W CLB5P30283 435 aa7.46□□□□□ -1.22
RPF1YHR088W DSF2P38213 736 aa7.46□□□□□ -1.22
RPF1YHR088W YPR109WQ06104 294 aa7.46□□□□□ -1.22
RPF1YHR088W ERG12P07277 443 aa7.44□□□□□ -1.22
RPF1YHR088W SDH2P21801 266 aa7.44□□□□□ -1.22
RPF1YHR088W GCD11P32481 527 aaKnown RBP7.42□□□□□ -1.22
RPF1YHR088W PAT1P25644 796 aaKnown RBP7.41□□□□□ -1.22
RPF1YHR088W SPT16P32558 1035 aaKnown RBP7.41□□□□□ -1.22
RPF1YHR088W TRK1P12685 1235 aa7.4□□□□□ -1.22
RPF1YHR088W TY1A-DR4O74302 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-HP0C2I4 478 aaKnown RBP7.37□□□□□ -1.23
RPF1YHR088W TY1A-AP0CX57 440 aa7.37□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 61.9 ms