RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	CKB1	P43639	278 aa		7.18	□□□□□ -1.26
VMA22	YHR060W	HTA1	P04911	132 aa	Known RBP	7.17	□□□□□ -1.26
VMA22	YHR060W	HTA2	P04912	132 aa		7.17	□□□□□ -1.26
VMA22	YHR060W	VPS70	P47161	811 aa		7.17	□□□□□ -1.26
VMA22	YHR060W	ULI1	P43604	169 aa		7.16	□□□□□ -1.26
VMA22	YHR060W	DCW1	P36091	449 aa		7.15	□□□□□ -1.26
VMA22	YHR060W	TRP5	P00931	707 aa	Known RBP	7.12	□□□□□ -1.27
VMA22	YHR060W	JIP4	Q03361	876 aa		7.1	□□□□□ -1.27
VMA22	YHR060W	REF2	P42073	533 aa	Predicted RBP	7.09	□□□□□ -1.27
VMA22	YHR060W	IOC2	Q12072	812 aa		7.09	□□□□□ -1.27
VMA22	YHR060W	PTC4	P38089	393 aa		7.08	□□□□□ -1.28
VMA22	YHR060W	YEL023C	P39992	682 aa		7.08	□□□□□ -1.28
VMA22	YHR060W	YGR273C	P53329	174 aa		7.08	□□□□□ -1.28
VMA22	YHR060W	DMA2	P53924	522 aa		7.08	□□□□□ -1.28
VMA22	YHR060W	YNL035C	P53962	389 aa	Known RBP	7.06	□□□□□ -1.28
VMA22	YHR060W	LDB19	Q12502	818 aa		7.06	□□□□□ -1.28
VMA22	YHR060W	SPB4	P25808	606 aa	Predicted RBP	7.04	□□□□□ -1.28
VMA22	YHR060W	SOL3	P38858	249 aa		7.04	□□□□□ -1.28
VMA22	YHR060W	MAK21	Q12176	1025 aa	Known RBP	7.04	□□□□□ -1.28
VMA22	YHR060W	RLF2	Q12495	606 aa		7.04	□□□□□ -1.28
VMA22	YHR060W	AI4	P03878	556 aa		7.03	□□□□□ -1.28
VMA22	YHR060W	SEC61	P32915	480 aa		7.03	□□□□□ -1.28
VMA22	YHR060W	PBS2	P08018	668 aa		7.02	□□□□□ -1.29
VMA22	YHR060W	MPH3	P0CE00	602 aa		7.02	□□□□□ -1.29
VMA22	YHR060W	RTG1	P32607	177 aa		7.02	□□□□□ -1.29
VMA22	YHR060W	UBP14	P38237	781 aa	Known RBP	7.01	□□□□□ -1.29
VMA22	YHR060W	NST1	P53935	1240 aa		7.01	□□□□□ -1.29
VMA22	YHR060W	VHR2	P40041	505 aa		7	□□□□□ -1.29
VMA22	YHR060W	TFG1	P41895	735 aa	Predicted RBP	7	□□□□□ -1.29
VMA22	YHR060W	DAN4	P47179	1161 aa		7	□□□□□ -1.29
VMA22	YHR060W	KIC1	P38692	1080 aa		6.99	□□□□□ -1.29
VMA22	YHR060W	COX6	P00427	148 aa		6.98	□□□□□ -1.29
VMA22	YHR060W	KEX1	P09620	729 aa		6.98	□□□□□ -1.29
VMA22	YHR060W	YLR326W	Q06170	240 aa	Known RBP	6.98	□□□□□ -1.29
VMA22	YHR060W	NCR1	Q12200	1170 aa		6.98	□□□□□ -1.29
VMA22	YHR060W	DSF2	P38213	736 aa		6.97	□□□□□ -1.29
VMA22	YHR060W	FKH1	P40466	484 aa		6.97	□□□□□ -1.29
VMA22	YHR060W	RAD54	P32863	898 aa		6.96	□□□□□ -1.3
VMA22	YHR060W	HGH1	P48362	394 aa	Known RBP	6.94	□□□□□ -1.3
VMA22	YHR060W	YDR090C	Q03193	310 aa		6.94	□□□□□ -1.3
VMA22	YHR060W	MAM3	Q12296	706 aa		6.94	□□□□□ -1.3
VMA22	YHR060W	RPP1B	P10622	106 aa	Known RBP	6.92	□□□□□ -1.3
VMA22	YHR060W	AIR2	Q12476	344 aa	Known RBP	6.92	□□□□□ -1.3
VMA22	YHR060W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	6.91	□□□□□ -1.3	not detected
VMA22	YHR060W	PML39	Q03760	334 aa		6.91	□□□□□ -1.3
VMA22	YHR060W	YDL129W	Q07555	291 aa		6.91	□□□□□ -1.3
VMA22	YHR060W	ILV3	P39522	585 aa	Known RBP	6.9	□□□□□ -1.3
VMA22	YHR060W	YJL171C	P46992	396 aa		6.9	□□□□□ -1.3
VMA22	YHR060W	SLI15	P38283	698 aa		6.89	□□□□□ -1.31
VMA22	YHR060W	IES2	P40154	320 aa		6.86	□□□□□ -1.31
VMA22	YHR060W	PEX29	Q03370	554 aa		6.86	□□□□□ -1.31
VMA22	YHR060W	BMT6	Q12291	365 aa		6.86	□□□□□ -1.31
VMA22	YHR060W	MID1	P41821	548 aa		6.84	□□□□□ -1.31
VMA22	YHR060W	SAP30	P38429	201 aa		6.83	□□□□□ -1.32
VMA22	YHR060W	NUP42	P49686	430 aa	Known RBP	6.82	□□□□□ -1.32
VMA22	YHR060W	YNR021W	P53723	404 aa	Known RBP	6.82	□□□□□ -1.32
VMA22	YHR060W	DPL1	Q05567	589 aa		6.82	□□□□□ -1.32
VMA22	YHR060W	PSE1	P32337	1089 aa	Known RBP	6.81	□□□□□ -1.32
VMA22	YHR060W	CSC1	Q06538	782 aa		6.81	□□□□□ -1.32
VMA22	YHR060W	ORC6	P38826	435 aa		6.8	□□□□□ -1.32
VMA22	YHR060W	MPC54	Q08550	464 aa		6.8	□□□□□ -1.32
VMA22	YHR060W	CDC73	Q06697	393 aa		6.79	□□□□□ -1.32
VMA22	YHR060W	PEX21	P50091	288 aa		6.78	□□□□□ -1.32
VMA22	YHR060W	TFB4	Q12004	338 aa		6.78	□□□□□ -1.32
VMA22	YHR060W	KIN1	P13185	1064 aa		6.77	□□□□□ -1.33
VMA22	YHR060W	DIT2	P21595	489 aa		6.77	□□□□□ -1.33
VMA22	YHR060W	ARH1	P48360	493 aa		6.77	□□□□□ -1.33
VMA22	YHR060W	ISU2	Q12056	156 aa		6.77	□□□□□ -1.33
VMA22	YHR060W	GAP1	P19145	602 aa	Predicted RBP	6.76	□□□□□ -1.33
VMA22	YHR060W	NMA111	P53920	997 aa		6.76	□□□□□ -1.33
VMA22	YHR060W	AIM44	Q99299	758 aa		6.76	□□□□□ -1.33
VMA22	YHR060W	HAP5	Q02516	242 aa		6.75	□□□□□ -1.33
VMA22	YHR060W	ELP4	Q02884	456 aa	Known RBP	6.75	□□□□□ -1.33
VMA22	YHR060W	ATF2	P53296	535 aa		6.74	□□□□□ -1.33
VMA22	YHR060W	AIM7	Q12156	149 aa		6.74	□□□□□ -1.33
VMA22	YHR060W	RGR1	P19263	1082 aa		6.73	□□□□□ -1.33
VMA22	YHR060W	CHL1	P22516	861 aa	Predicted RBP	6.73	□□□□□ -1.33
VMA22	YHR060W	CLB5	P30283	435 aa		6.73	□□□□□ -1.33
VMA22	YHR060W	PRE3	P38624	215 aa		6.73	□□□□□ -1.33
VMA22	YHR060W	MVP1	P40959	511 aa	Known RBP	6.73	□□□□□ -1.33
VMA22	YHR060W	GLC3	P32775	704 aa		6.71	□□□□□ -1.34
VMA22	YHR060W	SPT23	P35210	1082 aa		6.71	□□□□□ -1.34
VMA22	YHR060W	BNI4	P53858	892 aa		6.7	□□□□□ -1.34
VMA22	YHR060W	TEA1	P47988	759 aa		6.69	□□□□□ -1.34
VMA22	YHR060W	YPR109W	Q06104	294 aa		6.69	□□□□□ -1.34
VMA22	YHR060W	TUM1	Q08686	304 aa	Known RBP	6.68	□□□□□ -1.34
VMA22	YHR060W	YRR1	Q12172	810 aa		6.67	□□□□□ -1.34
VMA22	YHR060W	PTC2	P39966	464 aa	Known RBP	6.66	□□□□□ -1.34
VMA22	YHR060W	YDR344C	Q05510	147 aa		6.64	□□□□□ -1.35
VMA22	YHR060W	YML082W	Q04533	649 aa	Known RBP	6.63	□□□□□ -1.35
VMA22	YHR060W	NPL4	P33755	580 aa		6.62	□□□□□ -1.35
VMA22	YHR060W	HPC2	Q01448	625 aa		6.6	□□□□□ -1.35
VMA22	YHR060W	NUD1	P32336	851 aa		6.59	□□□□□ -1.35
VMA22	YHR060W	PDR1	P12383	1068 aa		6.58	□□□□□ -1.36
VMA22	YHR060W	YMR196W	Q04336	1088 aa		6.58	□□□□□ -1.36
VMA22	YHR060W	GUA1	P38625	525 aa	Known RBP	6.57	□□□□□ -1.36
VMA22	YHR060W	SSA1	P10591	642 aa	Known RBP	6.56	□□□□□ -1.36
VMA22	YHR060W	RAM1	P22007	431 aa		6.56	□□□□□ -1.36
VMA22	YHR060W	RTF1	P53064	558 aa		6.56	□□□□□ -1.36
VMA22	YHR060W	NIS1	P53939	407 aa		6.56	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms