RNA–Protein interactions for RNA: YFL038C

YPT1, Transcript of Rab family GTPase, yeastyeast

Gene YPT1, Length 621 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YPT1YFL038C TY1B-LR1Q12088 1755 aaKnown RBP9.24□□□□□ -0.93
YPT1YFL038C TY1B-NL1Q12112 1755 aa9.24□□□□□ -0.93
YPT1YFL038C TY1B-GR1Q12141 1755 aa9.24□□□□□ -0.93
YPT1YFL038C TY1B-BLQ12490 1755 aa9.24□□□□□ -0.93
YPT1YFL038C TY3B-GQ99315 1547 aa9.23□□□□□ -0.93
YPT1YFL038C ESC1Q03661 1658 aaKnown RBP9.2□□□□□ -0.94
YPT1YFL038C GEA2P39993 1459 aaKnown RBP9.19□□□□□ -0.94
YPT1YFL038C CAT8P39113 1433 aa9.18□□□□□ -0.94
YPT1YFL038C RTT106P40161 455 aa9.18□□□□□ -0.94
YPT1YFL038C VPS15P22219 1454 aa9.17□□□□□ -0.94
YPT1YFL038C IRC20Q06554 1556 aa9.16□□□□□ -0.94
YPT1YFL038C RPA190P10964 1664 aaKnown RBP9.15□□□□□ -0.94
YPT1YFL038C DNF1P32660 1571 aa9.15□□□□□ -0.95
YPT1YFL038C YBT1P32386 1661 aa9.13□□□□□ -0.95
YPT1YFL038C RPO21P04050 1733 aaKnown RBP9.12□□□□□ -0.95
YPT1YFL038C NTE1Q04958 1679 aa9.11□□□□□ -0.95
YPT1YFL038C MTC1P47018 478 aaKnown RBP9.08□□□□□ -0.96
YPT1YFL038C NUP159P40477 1460 aa9.08□□□□□ -0.96
YPT1YFL038C SRB8P25648 1427 aa9.07□□□□□ -0.96
YPT1YFL038C MET10P39692 1035 aa9.06□□□□□ -0.96
YPT1YFL038C PDR12Q02785 1511 aa9.05□□□□□ -0.96
YPT1YFL038C PDR10P51533 1564 aa9.03□□□□□ -0.96
YPT1YFL038C FAP1P53971 965 aa9.03□□□□□ -0.96
YPT1YFL038C GDB1Q06625 1536 aa9.03□□□□□ -0.96
YPT1YFL038C ARO1P08566 1588 aaKnown RBP9.01□□□□□ -0.97
YPT1YFL038C POL5P39985 1022 aaKnown RBP9.01□□□□□ -0.97
YPT1YFL038C CKB1P43639 278 aa8.99□□□□□ -0.97
YPT1YFL038C MET5P47169 1442 aa8.98□□□□□ -0.97
YPT1YFL038C NUP157P40064 1391 aaKnown RBP8.98□□□□□ -0.97
YPT1YFL038C MMS1Q06211 1407 aa8.97□□□□□ -0.97
YPT1YFL038C NSR1P27476 414 aaKnown RBP RIP-Chip data8.96□□□□□ -0.98not detected
YPT1YFL038C SPO14P36126 1683 aa8.96□□□□□ -0.98
YPT1YFL038C GCN2P15442 1659 aa8.95□□□□□ -0.98
YPT1YFL038C YSP2Q06681 1438 aa8.95□□□□□ -0.98
YPT1YFL038C YRF1-1P0CX20 1796 aa8.94□□□□□ -0.98
YPT1YFL038C YRF1-5P0CX21 1796 aa8.94□□□□□ -0.98
YPT1YFL038C YRF1-8P0CX22 1796 aa8.94□□□□□ -0.98
YPT1YFL038C BUD21Q08492 214 aaPredicted RBP8.94□□□□□ -0.98
YPT1YFL038C IQG1Q12280 1495 aa8.91□□□□□ -0.98
YPT1YFL038C BUD3P25558 1636 aa8.87□□□□□ -0.99
YPT1YFL038C NOP7P53261 605 aaKnown RBP8.87□□□□□ -0.99
YPT1YFL038C SEC3P33332 1336 aaKnown RBP8.86□□□□□ -0.99
YPT1YFL038C PDR5P33302 1511 aaKnown RBP8.86□□□□□ -0.99
YPT1YFL038C ENP1P38333 483 aaKnown RBP8.86□□□□□ -0.99
YPT1YFL038C PAF1P38351 445 aa8.82□□□□□ -1
YPT1YFL038C BNR1P40450 1375 aa8.82□□□□□ -1
YPT1YFL038C SEC7P11075 2009 aaKnown RBP8.8□□□□□ -1
YPT1YFL038C BFR2Q06631 534 aaKnown RBP8.79□□□□□ -1
YPT1YFL038C SPT7P35177 1332 aa8.78□□□□□ -1
YPT1YFL038C YOR093CQ12275 1648 aa8.76□□□□□ -1.01
YPT1YFL038C NOP2P40991 618 aaKnown RBP8.76□□□□□ -1.01
YPT1YFL038C LTE1P07866 1435 aa8.76□□□□□ -1.01
YPT1YFL038C RAV1P47104 1357 aa8.73□□□□□ -1.01
YPT1YFL038C MHP1P43638 1398 aa8.73□□□□□ -1.01
YPT1YFL038C CHC1P22137 1653 aaKnown RBP8.72□□□□□ -1.01
YPT1YFL038C RTC1Q08281 1341 aa8.72□□□□□ -1.01
YPT1YFL038C TY3B-IQ7LHG5 1498 aaKnown RBP8.71□□□□□ -1.01
YPT1YFL038C TRM3Q07527 1436 aa8.7□□□□□ -1.02
YPT1YFL038C PDR11P40550 1411 aa8.69□□□□□ -1.02
YPT1YFL038C DOP1Q03921 1698 aa8.65□□□□□ -1.02
YPT1YFL038C ESL2P36168 1195 aa8.65□□□□□ -1.02
YPT1YFL038C VMR1P38735 1592 aa8.65□□□□□ -1.03
YPT1YFL038C DRS2P39524 1355 aa8.64□□□□□ -1.03
YPT1YFL038C ORC1P54784 914 aaPredicted RBP8.64□□□□□ -1.03
YPT1YFL038C NUP188P52593 1655 aaKnown RBP8.63□□□□□ -1.03
YPT1YFL038C PSD2P53037 1138 aaKnown RBP8.63□□□□□ -1.03
YPT1YFL038C SCT1P32784 759 aa8.62□□□□□ -1.03
YPT1YFL038C YLR419WQ06698 1435 aaKnown RBP8.62□□□□□ -1.03
YPT1YFL038C IML1P47170 1584 aa8.61□□□□□ -1.03
YPT1YFL038C PRS1P32895 427 aaKnown RBP8.61□□□□□ -1.03
YPT1YFL038C TAF5P38129 798 aa8.61□□□□□ -1.03
YPT1YFL038C PDS5Q04264 1277 aa8.6□□□□□ -1.03
YPT1YFL038C KIP3P53086 805 aaKnown RBP8.58□□□□□ -1.04
YPT1YFL038C URN1Q06525 465 aaKnown RBP8.57□□□□□ -1.04
YPT1YFL038C LEU3P08638 886 aa8.56□□□□□ -1.04
YPT1YFL038C IPL1P38991 367 aa8.56□□□□□ -1.04
YPT1YFL038C DNF2Q12675 1612 aa8.55□□□□□ -1.04
YPT1YFL038C NUP192P47054 1683 aa8.55□□□□□ -1.04
YPT1YFL038C SPE2P21182 396 aa8.52□□□□□ -1.05
YPT1YFL038C TYS1P36421 394 aaKnown RBP8.52□□□□□ -1.05
YPT1YFL038C PRY3P47033 881 aa8.52□□□□□ -1.05
YPT1YFL038C ITT1Q04638 464 aa8.52□□□□□ -1.05
YPT1YFL038C ALD4P46367 519 aaKnown RBP8.5□□□□□ -1.05
YPT1YFL038C BNI1P41832 1953 aa8.49□□□□□ -1.05
YPT1YFL038C YAP3P38749 330 aa8.47□□□□□ -1.05
YPT1YFL038C BCK1Q01389 1478 aa8.46□□□□□ -1.05
YPT1YFL038C NST1P53935 1240 aa8.46□□□□□ -1.06
YPT1YFL038C IOC4Q04213 475 aa8.46□□□□□ -1.06
YPT1YFL038C HAP1P0CE41 1502 aa8.45□□□□□ -1.06
YPT1YFL038C TAF8Q03750 510 aa8.45□□□□□ -1.06
YPT1YFL038C FKH1P40466 484 aa8.44□□□□□ -1.06
YPT1YFL038C RAD9P14737 1309 aa8.44□□□□□ -1.06
YPT1YFL038C CHZ1P40019 153 aaPredicted RBP8.43□□□□□ -1.06
YPT1YFL038C RPP0P05317 312 aaKnown RBP8.42□□□□□ -1.06
YPT1YFL038C NAP1P25293 417 aaKnown RBP8.42□□□□□ -1.06
YPT1YFL038C RTG3P38165 486 aa8.42□□□□□ -1.06
YPT1YFL038C TFA1P36100 482 aa8.4□□□□□ -1.06
YPT1YFL038C CAB1Q04430 367 aa8.39□□□□□ -1.07
YPT1YFL038C VPS27P40343 622 aaKnown RBP8.38□□□□□ -1.07
YPT1YFL038C CDC45Q08032 650 aa8.38□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms