RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W YEL023CP39992 682 aa9.33□□□□□ -0.92
PRE1YER012W ABP1P15891 592 aaKnown RBP9.32□□□□□ -0.92
PRE1YER012W DAN4P47179 1161 aa9.32□□□□□ -0.92
PRE1YER012W ATH1P48016 1211 aa9.32□□□□□ -0.92
PRE1YER012W SEC61P32915 480 aa9.31□□□□□ -0.92
PRE1YER012W JIP4Q03361 876 aa9.27□□□□□ -0.93
PRE1YER012W GUT1P32190 709 aa9.26□□□□□ -0.93
PRE1YER012W PTC4P38089 393 aa9.25□□□□□ -0.93
PRE1YER012W TFG1P41895 735 aaPredicted RBP9.25□□□□□ -0.93
PRE1YER012W SAP30P38429 201 aa9.24□□□□□ -0.93
PRE1YER012W SOL3P38858 249 aa9.21□□□□□ -0.94
PRE1YER012W NST1P53935 1240 aa9.18□□□□□ -0.94
PRE1YER012W YDL129WQ07555 291 aa9.18□□□□□ -0.94
PRE1YER012W PML39Q03760 334 aa9.17□□□□□ -0.94
PRE1YER012W SET1P38827 1080 aaKnown RBP9.14□□□□□ -0.95
PRE1YER012W YDR344CQ05510 147 aa9.14□□□□□ -0.95
PRE1YER012W ILV3P39522 585 aaKnown RBP9.12□□□□□ -0.95
PRE1YER012W MID1P41821 548 aa9.11□□□□□ -0.95
PRE1YER012W YGR273CP53329 174 aa9.08□□□□□ -0.96
PRE1YER012W NOP53Q12080 455 aaKnown RBP9.08□□□□□ -0.96
PRE1YER012W MPH3P0CE00 602 aa9.06□□□□□ -0.96
PRE1YER012W AI4P03878 556 aa9.03□□□□□ -0.96
PRE1YER012W PRE3P38624 215 aa9□□□□□ -0.97
PRE1YER012W CHL1P22516 861 aaPredicted RBP8.98□□□□□ -0.97
PRE1YER012W ELP4Q02884 456 aaKnown RBP8.98□□□□□ -0.97
PRE1YER012W PEX29Q03370 554 aa8.97□□□□□ -0.97
PRE1YER012W VHR2P40041 505 aa8.94□□□□□ -0.98
PRE1YER012W KEX1P09620 729 aa8.93□□□□□ -0.98
PRE1YER012W SLI15P38283 698 aa8.93□□□□□ -0.98
PRE1YER012W ARH1P48360 493 aa8.9□□□□□ -0.98
PRE1YER012W MPC54Q08550 464 aa8.9□□□□□ -0.98
PRE1YER012W BCK2P33306 851 aa8.89□□□□□ -0.99
PRE1YER012W UBP14P38237 781 aaKnown RBP8.89□□□□□ -0.99
PRE1YER012W YLR326WQ06170 240 aaKnown RBP8.89□□□□□ -0.99
PRE1YER012W VRP1P37370 817 aa8.84□□□□□ -0.99
PRE1YER012W HAP5Q02516 242 aa8.84□□□□□ -0.99
PRE1YER012W PCS60P38137 543 aaKnown RBP RIP-Chip data8.83□□□□□ -1not detected
PRE1YER012W VPS70P47161 811 aa8.83□□□□□ -1
PRE1YER012W CDC73Q06697 393 aa8.83□□□□□ -1
PRE1YER012W NMA111P53920 997 aa8.82□□□□□ -1
PRE1YER012W DMA1P38823 416 aa8.81□□□□□ -1
PRE1YER012W DPL1Q05567 589 aa8.8□□□□□ -1
PRE1YER012W YPR148CQ06523 435 aa8.8□□□□□ -1
PRE1YER012W RAD54P32863 898 aa8.79□□□□□ -1
PRE1YER012W SPT23P35210 1082 aa8.79□□□□□ -1
PRE1YER012W IFH1P39520 1085 aa8.79□□□□□ -1
PRE1YER012W YDR090CQ03193 310 aa8.78□□□□□ -1
PRE1YER012W BNI4P53858 892 aa8.74□□□□□ -1.01
PRE1YER012W REF2P42073 533 aaPredicted RBP8.73□□□□□ -1.01
PRE1YER012W PTC2P39966 464 aaKnown RBP8.72□□□□□ -1.01
PRE1YER012W KIC1P38692 1080 aa8.69□□□□□ -1.02
PRE1YER012W ISU2Q12056 156 aa8.69□□□□□ -1.02
PRE1YER012W PDR1P12383 1068 aa8.68□□□□□ -1.02
PRE1YER012W XDJ1P39102 459 aa8.68□□□□□ -1.02
PRE1YER012W YPR015CQ12531 247 aa8.68□□□□□ -1.02
PRE1YER012W YML082WQ04533 649 aaKnown RBP8.65□□□□□ -1.02
PRE1YER012W RAM1P22007 431 aa8.63□□□□□ -1.03
PRE1YER012W COX6P00427 148 aa8.58□□□□□ -1.04
PRE1YER012W YRR1Q12172 810 aa8.58□□□□□ -1.04
PRE1YER012W RPP1BP10622 106 aaKnown RBP8.57□□□□□ -1.04
PRE1YER012W ORC6P38826 435 aa8.57□□□□□ -1.04
PRE1YER012W PEX21P50091 288 aa8.57□□□□□ -1.04
PRE1YER012W PBS2P08018 668 aa8.55□□□□□ -1.04
PRE1YER012W DPS1P04802 557 aaKnown RBP8.54□□□□□ -1.04
PRE1YER012W GAP1P19145 602 aaPredicted RBP8.54□□□□□ -1.04
PRE1YER012W TUM1Q08686 304 aaKnown RBP8.54□□□□□ -1.04
PRE1YER012W MAK21Q12176 1025 aaKnown RBP8.53□□□□□ -1.04
PRE1YER012W CKB1P43639 278 aa8.51□□□□□ -1.05
PRE1YER012W SAS10Q12136 610 aaPredicted RBP8.51□□□□□ -1.05
PRE1YER012W CSC1Q06538 782 aa8.5□□□□□ -1.05
PRE1YER012W GYP1Q08484 637 aa8.5□□□□□ -1.05
PRE1YER012W TFB4Q12004 338 aa8.48□□□□□ -1.05
PRE1YER012W MVP1P40959 511 aaKnown RBP8.47□□□□□ -1.05
PRE1YER012W STR2P47164 639 aa8.47□□□□□ -1.05
PRE1YER012W ISM1P48526 1002 aa8.46□□□□□ -1.06
PRE1YER012W NUD1P32336 851 aa8.45□□□□□ -1.06
PRE1YER012W BUD20Q08004 166 aaPredicted RBP8.45□□□□□ -1.06
PRE1YER012W RGR1P19263 1082 aa8.44□□□□□ -1.06
PRE1YER012W YPR109WQ06104 294 aa8.44□□□□□ -1.06
PRE1YER012W RAS1P01119 309 aa8.43□□□□□ -1.06
PRE1YER012W MAM3Q12296 706 aa8.42□□□□□ -1.06
PRE1YER012W SDH2P21801 266 aa8.41□□□□□ -1.06
PRE1YER012W IES2P40154 320 aa8.41□□□□□ -1.06
PRE1YER012W SPB4P25808 606 aaPredicted RBP8.4□□□□□ -1.06
PRE1YER012W DSF2P38213 736 aa8.38□□□□□ -1.07
PRE1YER012W PRT1P06103 763 aaKnown RBP8.37□□□□□ -1.07
PRE1YER012W NPL4P33755 580 aa8.37□□□□□ -1.07
PRE1YER012W GCD11P32481 527 aaKnown RBP8.36□□□□□ -1.07
PRE1YER012W TY1A-DR4O74302 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-HP0C2I4 478 aaKnown RBP8.35□□□□□ -1.07
PRE1YER012W TY1A-AP0CX57 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-PR1P0CX58 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-ORP0CX59 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-PR2P0CX60 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-DR5P0CX65 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-ER2P0CX66 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-GR3P0CX67 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-LR1P0CX68 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-MR2P0CX69 440 aa8.35□□□□□ -1.07
PRE1YER012W TY1A-JR2P47099 440 aa8.35□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms