RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeastyeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP28YDR243C SAM3Q08986 587 aa6.25□□□□□ -1.41
PRP28YDR243C VMA1P17255 1071 aaKnown RBP6.23□□□□□ -1.41
PRP28YDR243C VRP1P37370 817 aa6.23□□□□□ -1.41
PRP28YDR243C RTG3P38165 486 aa6.23□□□□□ -1.41
PRP28YDR243C RCR1P38212 213 aa6.23□□□□□ -1.41
PRP28YDR243C STS1P38637 319 aa6.19□□□□□ -1.42
PRP28YDR243C YFR006WP43590 535 aa6.19□□□□□ -1.42
PRP28YDR243C JIP4Q03361 876 aa6.17□□□□□ -1.42
PRP28YDR243C ABP1P15891 592 aaKnown RBP6.16□□□□□ -1.42
PRP28YDR243C DAN4P47179 1161 aa6.16□□□□□ -1.42
PRP28YDR243C YDL129WQ07555 291 aa6.16□□□□□ -1.42
PRP28YDR243C RAM2P29703 316 aa6.13□□□□□ -1.43
PRP28YDR243C YFR016CP43597 1233 aaKnown RBP6.11□□□□□ -1.43
PRP28YDR243C SRC1Q03707 834 aa6.11□□□□□ -1.43
PRP28YDR243C GYP5Q12344 894 aa6.1□□□□□ -1.43
PRP28YDR243C HTA1P04911 132 aaKnown RBP6.08□□□□□ -1.44
PRP28YDR243C HTA2P04912 132 aa6.08□□□□□ -1.44
PRP28YDR243C PTC4P38089 393 aa6.07□□□□□ -1.44
PRP28YDR243C YPR148CQ06523 435 aa6.07□□□□□ -1.44
PRP28YDR243C MAK11P20484 414 aaKnown RBP6.05□□□□□ -1.44
PRP28YDR243C YEL023CP39992 682 aa6.04□□□□□ -1.44
PRP28YDR243C DCW1P36091 449 aa6.03□□□□□ -1.44
PRP28YDR243C RPS0BP46654 252 aaKnown RBP6.01□□□□□ -1.45
PRP28YDR243C EDS1P38073 919 aa5.98□□□□□ -1.45
PRP28YDR243C COQ8P27697 501 aa5.97□□□□□ -1.45
PRP28YDR243C MIF2P35201 549 aa5.96□□□□□ -1.46
PRP28YDR243C ELP4Q02884 456 aaKnown RBP5.96□□□□□ -1.46
PRP28YDR243C SKI3P17883 1432 aaKnown RBP5.94□□□□□ -1.46
PRP28YDR243C GRE2Q12068 342 aaKnown RBP5.93□□□□□ -1.46
PRP28YDR243C PTC3P34221 468 aaKnown RBP5.93□□□□□ -1.46
PRP28YDR243C PML39Q03760 334 aa5.92□□□□□ -1.46
PRP28YDR243C YDR344CQ05510 147 aa5.92□□□□□ -1.46
PRP28YDR243C YRB30P53107 440 aaPredicted RBP5.91□□□□□ -1.46
PRP28YDR243C DMA1P38823 416 aa5.9□□□□□ -1.46
PRP28YDR243C NOP53Q12080 455 aaKnown RBP5.9□□□□□ -1.46
PRP28YDR243C SET1P38827 1080 aaKnown RBP5.9□□□□□ -1.47
PRP28YDR243C TCB2P48231 1178 aa5.88□□□□□ -1.47
PRP28YDR243C ARH1P48360 493 aa5.88□□□□□ -1.47
PRP28YDR243C GUT1P32190 709 aa5.88□□□□□ -1.47
PRP28YDR243C KRI1P42846 591 aaKnown RBP5.88□□□□□ -1.47
PRP28YDR243C YPL062WQ02781 134 aa5.87□□□□□ -1.47
PRP28YDR243C ATH1P48016 1211 aa5.86□□□□□ -1.47
PRP28YDR243C CWC22P53333 577 aaKnown RBP5.86□□□□□ -1.47
PRP28YDR243C NST1P53935 1240 aa5.85□□□□□ -1.47
PRP28YDR243C SOL3P38858 249 aa5.82□□□□□ -1.48
PRP28YDR243C SPT23P35210 1082 aa5.81□□□□□ -1.48
PRP28YDR243C MID1P41821 548 aa5.81□□□□□ -1.48
PRP28YDR243C SPA2P23201 1466 aaKnown RBP5.81□□□□□ -1.48
PRP28YDR243C AI4P03878 556 aa5.79□□□□□ -1.48
PRP28YDR243C MNN4P36044 1178 aa5.79□□□□□ -1.48
PRP28YDR243C MPH3P0CE00 602 aa5.78□□□□□ -1.48
PRP28YDR243C ENP1P38333 483 aaKnown RBP5.77□□□□□ -1.49
PRP28YDR243C IFH1P39520 1085 aa5.77□□□□□ -1.49
PRP28YDR243C PEX29Q03370 554 aa5.77□□□□□ -1.49
PRP28YDR243C DEF1P35732 738 aaKnown RBP5.76□□□□□ -1.49
PRP28YDR243C YGR273CP53329 174 aa5.76□□□□□ -1.49
PRP28YDR243C HAP5Q02516 242 aa5.76□□□□□ -1.49
PRP28YDR243C RLF2Q12495 606 aa5.76□□□□□ -1.49
PRP28YDR243C ENV11P53246 860 aa5.75□□□□□ -1.49
PRP28YDR243C BNI4P53858 892 aa5.75□□□□□ -1.49
PRP28YDR243C YML082WQ04533 649 aaKnown RBP5.74□□□□□ -1.49
PRP28YDR243C NUG1P40010 520 aaKnown RBP5.73□□□□□ -1.49
PRP28YDR243C SAS10Q12136 610 aaPredicted RBP5.73□□□□□ -1.49
PRP28YDR243C NAP1P25293 417 aaKnown RBP5.72□□□□□ -1.49
PRP28YDR243C LEO1P38439 464 aa5.72□□□□□ -1.49
PRP28YDR243C ILV3P39522 585 aaKnown RBP5.72□□□□□ -1.49
PRP28YDR243C VPS70P47161 811 aa5.72□□□□□ -1.49
PRP28YDR243C QCR6P00127 147 aa5.71□□□□□ -1.5
PRP28YDR243C TRK1P12685 1235 aa5.71□□□□□ -1.5
PRP28YDR243C AIM44Q99299 758 aa5.71□□□□□ -1.5
PRP28YDR243C TCB3Q03640 1545 aaKnown RBP5.71□□□□□ -1.5
PRP28YDR243C PTC2P39966 464 aaKnown RBP5.7□□□□□ -1.5
PRP28YDR243C UBP14P38237 781 aaKnown RBP5.7□□□□□ -1.5
PRP28YDR243C CLC1P17891 233 aa5.69□□□□□ -1.5
PRP28YDR243C MPC54Q08550 464 aa5.69□□□□□ -1.5
PRP28YDR243C YGR130CP53278 816 aa5.68□□□□□ -1.5
PRP28YDR243C IOC4Q04213 475 aa5.68□□□□□ -1.5
PRP28YDR243C KEX1P09620 729 aa5.67□□□□□ -1.5
PRP28YDR243C FPR3P38911 411 aaKnown RBP5.67□□□□□ -1.5
PRP28YDR243C YLR326WQ06170 240 aaKnown RBP5.67□□□□□ -1.5
PRP28YDR243C SEC3P33332 1336 aaKnown RBP5.67□□□□□ -1.5
PRP28YDR243C SPT7P35177 1332 aa5.67□□□□□ -1.5
PRP28YDR243C RAS1P01119 309 aa5.67□□□□□ -1.5
PRP28YDR243C VHR2P40041 505 aa5.67□□□□□ -1.5
PRP28YDR243C REF2P42073 533 aaPredicted RBP5.66□□□□□ -1.5
PRP28YDR243C SGS1P35187 1447 aa5.66□□□□□ -1.5
PRP28YDR243C IME2P32581 645 aa5.65□□□□□ -1.51
PRP28YDR243C GBP2P25555 427 aaKnown RBP RIP-Chip data5.64□□□□□ -1.51not detected
PRP28YDR243C CKB1P43639 278 aa5.64□□□□□ -1.51
PRP28YDR243C NMA111P53920 997 aa5.64□□□□□ -1.51
PRP28YDR243C YDR090CQ03193 310 aa5.64□□□□□ -1.51
PRP28YDR243C PSH1Q12161 406 aa5.64□□□□□ -1.51
PRP28YDR243C SLI15P38283 698 aa5.63□□□□□ -1.51
PRP28YDR243C SSN2P38931 1420 aa5.63□□□□□ -1.51
PRP28YDR243C SPT2P06843 333 aaPredicted RBP5.62□□□□□ -1.51
PRP28YDR243C PCS60P38137 543 aaKnown RBP RIP-Chip data5.62□□□□□ -1.51not detected
PRP28YDR243C DPL1Q05567 589 aa5.62□□□□□ -1.51
PRP28YDR243C STH1P32597 1359 aa5.61□□□□□ -1.51
PRP28YDR243C RIX1P38883 763 aaPredicted RBP5.61□□□□□ -1.51
PRP28YDR243C RAD54P32863 898 aa5.6□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms