RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C BCK2P33306 851 aa7.75□□□□□ -1.17
SNU56YDR240C DCW1P36091 449 aa7.75□□□□□ -1.17
SNU56YDR240C PTC4P38089 393 aa7.75□□□□□ -1.17
SNU56YDR240C YEL023CP39992 682 aa7.73□□□□□ -1.17
SNU56YDR240C PRE3P38624 215 aa7.72□□□□□ -1.17
SNU56YDR240C GRE2Q12068 342 aaKnown RBP7.64□□□□□ -1.19
SNU56YDR240C PML39Q03760 334 aa7.57□□□□□ -1.2
SNU56YDR240C MAK11P20484 414 aaKnown RBP7.56□□□□□ -1.2
SNU56YDR240C MIF2P35201 549 aa7.55□□□□□ -1.2
SNU56YDR240C XDJ1P39102 459 aa7.55□□□□□ -1.2
SNU56YDR240C ATH1P48016 1211 aa7.55□□□□□ -1.2
SNU56YDR240C GUT1P32190 709 aa7.55□□□□□ -1.2
SNU56YDR240C VRP1P37370 817 aa7.55□□□□□ -1.2
SNU56YDR240C ELP4Q02884 456 aaKnown RBP7.54□□□□□ -1.2
SNU56YDR240C PTC3P34221 468 aaKnown RBP7.53□□□□□ -1.2
SNU56YDR240C YDR344CQ05510 147 aa7.53□□□□□ -1.2
SNU56YDR240C EDS1P38073 919 aa7.51□□□□□ -1.21
SNU56YDR240C RAM2P29703 316 aa7.5□□□□□ -1.21
SNU56YDR240C ARH1P48360 493 aa7.49□□□□□ -1.21
SNU56YDR240C NST1P53935 1240 aa7.48□□□□□ -1.21
SNU56YDR240C COQ8P27697 501 aa7.44□□□□□ -1.22
SNU56YDR240C MID1P41821 548 aa7.44□□□□□ -1.22
SNU56YDR240C AI4P03878 556 aa7.43□□□□□ -1.22
SNU56YDR240C MPH3P0CE00 602 aa7.42□□□□□ -1.22
SNU56YDR240C SOL3P38858 249 aa7.42□□□□□ -1.22
SNU56YDR240C SPT23P35210 1082 aa7.41□□□□□ -1.22
SNU56YDR240C PEX29Q03370 554 aa7.41□□□□□ -1.22
SNU56YDR240C DPS1P04802 557 aaKnown RBP7.4□□□□□ -1.22
SNU56YDR240C HAP5Q02516 242 aa7.36□□□□□ -1.23
SNU56YDR240C NOP53Q12080 455 aaKnown RBP7.35□□□□□ -1.23
SNU56YDR240C ILV3P39522 585 aaKnown RBP7.34□□□□□ -1.23
SNU56YDR240C BNI4P53858 892 aa7.33□□□□□ -1.24
SNU56YDR240C YGR273CP53329 174 aa7.3□□□□□ -1.24
SNU56YDR240C YML082WQ04533 649 aaKnown RBP7.3□□□□□ -1.24
SNU56YDR240C PTC2P39966 464 aaKnown RBP7.29□□□□□ -1.24
SNU56YDR240C MPC54Q08550 464 aa7.29□□□□□ -1.24
SNU56YDR240C NMA111P53920 997 aa7.23□□□□□ -1.25
SNU56YDR240C SLI15P38283 698 aa7.22□□□□□ -1.25
SNU56YDR240C SRC1Q03707 834 aa7.22□□□□□ -1.25
SNU56YDR240C DPL1Q05567 589 aa7.21□□□□□ -1.26
SNU56YDR240C KEX1P09620 729 aa7.13□□□□□ -1.27
SNU56YDR240C ISU2Q12056 156 aa7.13□□□□□ -1.27
SNU56YDR240C YPR015CQ12531 247 aa7.11□□□□□ -1.27
SNU56YDR240C RAM1P22007 431 aa7.11□□□□□ -1.27
SNU56YDR240C RAS1P01119 309 aa7.09□□□□□ -1.27
SNU56YDR240C SET1P38827 1080 aaKnown RBP7.08□□□□□ -1.28
SNU56YDR240C CDC73Q06697 393 aa7.06□□□□□ -1.28
SNU56YDR240C GYP1Q08484 637 aa7.05□□□□□ -1.28
SNU56YDR240C RGA2Q06407 1009 aa7.04□□□□□ -1.28
SNU56YDR240C IFH1P39520 1085 aa7.04□□□□□ -1.28
SNU56YDR240C YLR326WQ06170 240 aaKnown RBP7.04□□□□□ -1.28
SNU56YDR240C AMS1P22855 1083 aa7.03□□□□□ -1.28
SNU56YDR240C RGA1P39083 1007 aa7.03□□□□□ -1.28
SNU56YDR240C UBP14P38237 781 aaKnown RBP7.02□□□□□ -1.29
SNU56YDR240C SAS4Q04003 481 aa7.01□□□□□ -1.29
SNU56YDR240C RPP1BP10622 106 aaKnown RBP6.99□□□□□ -1.29
SNU56YDR240C PDR1P12383 1068 aa6.99□□□□□ -1.29
SNU56YDR240C TRK1P12685 1235 aa6.99□□□□□ -1.29
SNU56YDR240C VHR2P40041 505 aa6.99□□□□□ -1.29
SNU56YDR240C RAD54P32863 898 aa6.98□□□□□ -1.29
SNU56YDR240C PCS60P38137 543 aaKnown RBP RIP-Chip data6.98□□□□□ -1.29not detected
SNU56YDR240C YPR148CQ06523 435 aa6.96□□□□□ -1.3
SNU56YDR240C SDH2P21801 266 aa6.95□□□□□ -1.3
SNU56YDR240C DMA1P38823 416 aa6.93□□□□□ -1.3
SNU56YDR240C YEL077CQ3E7X8 1277 aa6.93□□□□□ -1.3
SNU56YDR240C MRF1P30775 413 aaPredicted RBP6.91□□□□□ -1.3
SNU56YDR240C RQC2Q12532 1038 aaKnown RBP6.91□□□□□ -1.3
SNU56YDR240C YDR090CQ03193 310 aa6.87□□□□□ -1.31
SNU56YDR240C BUD20Q08004 166 aaPredicted RBP6.87□□□□□ -1.31
SNU56YDR240C PRT1P06103 763 aaKnown RBP6.86□□□□□ -1.31
SNU56YDR240C KIC1P38692 1080 aa6.86□□□□□ -1.31
SNU56YDR240C PEX21P50091 288 aa6.86□□□□□ -1.31
SNU56YDR240C YRR1Q12172 810 aa6.85□□□□□ -1.31
SNU56YDR240C VPS70P47161 811 aa6.84□□□□□ -1.31
SNU56YDR240C GAP1P19145 602 aaPredicted RBP6.83□□□□□ -1.32
SNU56YDR240C REF2P42073 533 aaPredicted RBP6.83□□□□□ -1.32
SNU56YDR240C CSC1Q06538 782 aa6.83□□□□□ -1.32
SNU56YDR240C TFB4Q12004 338 aa6.83□□□□□ -1.32
SNU56YDR240C STR2P47164 639 aa6.82□□□□□ -1.32
SNU56YDR240C SAS10Q12136 610 aaPredicted RBP6.82□□□□□ -1.32
SNU56YDR240C CKB1P43639 278 aa6.81□□□□□ -1.32
SNU56YDR240C ERG12P07277 443 aa6.8□□□□□ -1.32
SNU56YDR240C ISM1P48526 1002 aa6.79□□□□□ -1.32
SNU56YDR240C MAK21Q12176 1025 aaKnown RBP6.79□□□□□ -1.32
SNU56YDR240C NUD1P32336 851 aa6.79□□□□□ -1.32
SNU56YDR240C TUM1Q08686 304 aaKnown RBP6.79□□□□□ -1.32
SNU56YDR240C NPL4P33755 580 aa6.76□□□□□ -1.33
SNU56YDR240C YPL062WQ02781 134 aa6.75□□□□□ -1.33
SNU56YDR240C ORC6P38826 435 aa6.74□□□□□ -1.33
SNU56YDR240C BRE2P43132 505 aa6.74□□□□□ -1.33
SNU56YDR240C CST6P40535 587 aa6.73□□□□□ -1.33
SNU56YDR240C COX6P00427 148 aa6.73□□□□□ -1.33
SNU56YDR240C GCR2Q01722 534 aa6.73□□□□□ -1.33
SNU56YDR240C SPT16P32558 1035 aaKnown RBP6.72□□□□□ -1.33
SNU56YDR240C AIR1P40507 360 aaKnown RBP6.72□□□□□ -1.33
SNU56YDR240C GCD11P32481 527 aaKnown RBP6.71□□□□□ -1.34
SNU56YDR240C TY1A-DR4O74302 440 aa6.7□□□□□ -1.34
SNU56YDR240C TY1A-HP0C2I4 478 aaKnown RBP6.7□□□□□ -1.34
SNU56YDR240C TY1A-AP0CX57 440 aa6.7□□□□□ -1.34
SNU56YDR240C TY1A-PR1P0CX58 440 aa6.7□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms