RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C GRE2Q12068 342 aaKnown RBP5.61□□□□□ -1.51
PCF11YDR228C DCW1P36091 449 aa5.6□□□□□ -1.51
PCF11YDR228C NCR1Q12200 1170 aa5.6□□□□□ -1.51
PCF11YDR228C GUT1P32190 709 aa5.6□□□□□ -1.51
PCF11YDR228C YJL171CP46992 396 aa5.6□□□□□ -1.51
PCF11YDR228C PTC4P38089 393 aa5.58□□□□□ -1.52
PCF11YDR228C YEL023CP39992 682 aa5.58□□□□□ -1.52
PCF11YDR228C NST1P53935 1240 aa5.58□□□□□ -1.52
PCF11YDR228C BMT6Q12291 365 aa5.57□□□□□ -1.52
PCF11YDR228C ATH1P48016 1211 aa5.56□□□□□ -1.52
PCF11YDR228C SOL3P38858 249 aa5.55□□□□□ -1.52
PCF11YDR228C YDL129WQ07555 291 aa5.52□□□□□ -1.53
PCF11YDR228C TFG1P41895 735 aaPredicted RBP5.51□□□□□ -1.53
PCF11YDR228C SET1P38827 1080 aaKnown RBP5.5□□□□□ -1.53
PCF11YDR228C AI4P03878 556 aa5.49□□□□□ -1.53
PCF11YDR228C MPH3P0CE00 602 aa5.49□□□□□ -1.53
PCF11YDR228C SAP30P38429 201 aa5.47□□□□□ -1.53
PCF11YDR228C YGR273CP53329 174 aa5.47□□□□□ -1.53
PCF11YDR228C ILV3P39522 585 aaKnown RBP5.46□□□□□ -1.54
PCF11YDR228C PML39Q03760 334 aa5.45□□□□□ -1.54
PCF11YDR228C CHL1P22516 861 aaPredicted RBP5.42□□□□□ -1.54
PCF11YDR228C PRE3P38624 215 aa5.41□□□□□ -1.54
PCF11YDR228C IFH1P39520 1085 aa5.41□□□□□ -1.54
PCF11YDR228C MID1P41821 548 aa5.41□□□□□ -1.54
PCF11YDR228C YDR344CQ05510 147 aa5.41□□□□□ -1.54
PCF11YDR228C YPR148CQ06523 435 aa5.41□□□□□ -1.54
PCF11YDR228C UBP14P38237 781 aaKnown RBP5.39□□□□□ -1.55
PCF11YDR228C KEX1P09620 729 aa5.38□□□□□ -1.55
PCF11YDR228C ARH1P48360 493 aa5.38□□□□□ -1.55
PCF11YDR228C SLI15P38283 698 aa5.37□□□□□ -1.55
PCF11YDR228C YLR326WQ06170 240 aaKnown RBP5.37□□□□□ -1.55
PCF11YDR228C MPC54Q08550 464 aa5.35□□□□□ -1.55
PCF11YDR228C PEX29Q03370 554 aa5.33□□□□□ -1.56
PCF11YDR228C BCK2P33306 851 aa5.32□□□□□ -1.56
PCF11YDR228C VHR2P40041 505 aa5.32□□□□□ -1.56
PCF11YDR228C ELP4Q02884 456 aaKnown RBP5.32□□□□□ -1.56
PCF11YDR228C PCS60P38137 543 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
PCF11YDR228C HAP5Q02516 242 aa5.32□□□□□ -1.56
PCF11YDR228C YDR090CQ03193 310 aa5.32□□□□□ -1.56
PCF11YDR228C DPL1Q05567 589 aa5.3□□□□□ -1.56
PCF11YDR228C SPT23P35210 1082 aa5.3□□□□□ -1.56
PCF11YDR228C BNI4P53858 892 aa5.3□□□□□ -1.56
PCF11YDR228C REF2P42073 533 aaPredicted RBP5.29□□□□□ -1.56
PCF11YDR228C NMA111P53920 997 aa5.29□□□□□ -1.56
PCF11YDR228C DMA1P38823 416 aa5.28□□□□□ -1.56
PCF11YDR228C RAD54P32863 898 aa5.28□□□□□ -1.56
PCF11YDR228C VPS70P47161 811 aa5.28□□□□□ -1.56
PCF11YDR228C YML082WQ04533 649 aaKnown RBP5.27□□□□□ -1.57
PCF11YDR228C SAS10Q12136 610 aaPredicted RBP5.27□□□□□ -1.57
PCF11YDR228C CDC73Q06697 393 aa5.26□□□□□ -1.57
PCF11YDR228C VRP1P37370 817 aa5.26□□□□□ -1.57
PCF11YDR228C ISU2Q12056 156 aa5.26□□□□□ -1.57
PCF11YDR228C XDJ1P39102 459 aa5.25□□□□□ -1.57
PCF11YDR228C GAP1P19145 602 aaPredicted RBP5.24□□□□□ -1.57
PCF11YDR228C MAK21Q12176 1025 aaKnown RBP5.24□□□□□ -1.57
PCF11YDR228C COX6P00427 148 aa5.24□□□□□ -1.57
PCF11YDR228C RAM1P22007 431 aa5.23□□□□□ -1.57
PCF11YDR228C PTC2P39966 464 aaKnown RBP5.22□□□□□ -1.57
PCF11YDR228C CKB1P43639 278 aa5.22□□□□□ -1.57
PCF11YDR228C RPP1BP10622 106 aaKnown RBP5.2□□□□□ -1.58
PCF11YDR228C KIC1P38692 1080 aa5.2□□□□□ -1.58
PCF11YDR228C RGA2Q06407 1009 aa5.2□□□□□ -1.58
PCF11YDR228C YPR015CQ12531 247 aa5.2□□□□□ -1.58
PCF11YDR228C ORC6P38826 435 aa5.2□□□□□ -1.58
PCF11YDR228C CSC1Q06538 782 aa5.18□□□□□ -1.58
PCF11YDR228C PBS2P08018 668 aa5.17□□□□□ -1.58
PCF11YDR228C TFB4Q12004 338 aa5.17□□□□□ -1.58
PCF11YDR228C PDR1P12383 1068 aa5.15□□□□□ -1.58
PCF11YDR228C DSF2P38213 736 aa5.15□□□□□ -1.59
PCF11YDR228C MVP1P40959 511 aaKnown RBP5.13□□□□□ -1.59
PCF11YDR228C RGR1P19263 1082 aa5.12□□□□□ -1.59
PCF11YDR228C YRR1Q12172 810 aa5.12□□□□□ -1.59
PCF11YDR228C TUM1Q08686 304 aaKnown RBP5.11□□□□□ -1.59
PCF11YDR228C PEX21P50091 288 aa5.11□□□□□ -1.59
PCF11YDR228C STR2P47164 639 aa5.09□□□□□ -1.59
PCF11YDR228C BUD20Q08004 166 aaPredicted RBP5.09□□□□□ -1.59
PCF11YDR228C DPS1P04802 557 aaKnown RBP5.09□□□□□ -1.6
PCF11YDR228C PSE1P32337 1089 aaKnown RBP5.09□□□□□ -1.6
PCF11YDR228C SAS4Q04003 481 aa5.09□□□□□ -1.6
PCF11YDR228C MAM3Q12296 706 aa5.09□□□□□ -1.6
PCF11YDR228C NUP42P49686 430 aaKnown RBP5.08□□□□□ -1.6
PCF11YDR228C NUD1P32336 851 aa5.07□□□□□ -1.6
PCF11YDR228C ISM1P48526 1002 aa5.07□□□□□ -1.6
PCF11YDR228C YPR109WQ06104 294 aa5.07□□□□□ -1.6
PCF11YDR228C SDH2P21801 266 aa5.07□□□□□ -1.6
PCF11YDR228C IES2P40154 320 aa5.05□□□□□ -1.6
PCF11YDR228C GYP1Q08484 637 aa5.05□□□□□ -1.6
PCF11YDR228C RQC2Q12532 1038 aaKnown RBP5.05□□□□□ -1.6
PCF11YDR228C PRT1P06103 763 aaKnown RBP5.05□□□□□ -1.6
PCF11YDR228C SEC2P17065 759 aa5.05□□□□□ -1.6
PCF11YDR228C TY1A-DR4O74302 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-HP0C2I4 478 aaKnown RBP5.04□□□□□ -1.6
PCF11YDR228C TY1A-AP0CX57 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-PR1P0CX58 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-ORP0CX59 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-PR2P0CX60 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-DR5P0CX65 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-ER2P0CX66 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-GR3P0CX67 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-LR1P0CX68 440 aa5.04□□□□□ -1.6
Retrieved 100 of 5,963 RNA–protein pairs in 8.7 ms