RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	ABP1	P15891	592 aa	Known RBP	6.4	□□□□□ -1.38
CSN9	YDR179C	TFA1	P36100	482 aa		6.4	□□□□□ -1.38
CSN9	YDR179C	GYP5	Q12344	894 aa		6.4	□□□□□ -1.38
CSN9	YDR179C	HTA1	P04911	132 aa	Known RBP	6.39	□□□□□ -1.39
CSN9	YDR179C	HTA2	P04912	132 aa		6.39	□□□□□ -1.39
CSN9	YDR179C	DCW1	P36091	449 aa		6.38	□□□□□ -1.39
CSN9	YDR179C	ELP4	Q02884	456 aa	Known RBP	6.37	□□□□□ -1.39
CSN9	YDR179C	PML39	Q03760	334 aa		6.33	□□□□□ -1.4
CSN9	YDR179C	ARH1	P48360	493 aa		6.31	□□□□□ -1.4
CSN9	YDR179C	RTG3	P38165	486 aa		6.3	□□□□□ -1.4
CSN9	YDR179C	RAS1	P01119	309 aa		6.22	□□□□□ -1.41
CSN9	YDR179C	RCR1	P38212	213 aa		6.22	□□□□□ -1.41
CSN9	YDR179C	SPT23	P35210	1082 aa		6.21	□□□□□ -1.42
CSN9	YDR179C	MID1	P41821	548 aa		6.21	□□□□□ -1.42
CSN9	YDR179C	CST9	Q06032	482 aa		6.2	□□□□□ -1.42
CSN9	YDR179C	YPL062W	Q02781	134 aa		6.16	□□□□□ -1.42
CSN9	YDR179C	NST1	P53935	1240 aa		6.15	□□□□□ -1.42
CSN9	YDR179C	YML082W	Q04533	649 aa	Known RBP	6.14	□□□□□ -1.43
CSN9	YDR179C	BNI4	P53858	892 aa		6.09	□□□□□ -1.43
CSN9	YDR179C	HAP5	Q02516	242 aa		6.08	□□□□□ -1.44
CSN9	YDR179C	TRK1	P12685	1235 aa		6.07	□□□□□ -1.44
CSN9	YDR179C	GRE2	Q12068	342 aa	Known RBP	6.07	□□□□□ -1.44
CSN9	YDR179C	PEX29	Q03370	554 aa		6.05	□□□□□ -1.44
CSN9	YDR179C	SSP1	P38871	571 aa		6.04	□□□□□ -1.44
CSN9	YDR179C	SOL3	P38858	249 aa		6.03	□□□□□ -1.44
CSN9	YDR179C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	6.03	□□□□□ -1.44	not detected
CSN9	YDR179C	PTC2	P39966	464 aa	Known RBP	6.02	□□□□□ -1.45
CSN9	YDR179C	ILV3	P39522	585 aa	Known RBP	5.99	□□□□□ -1.45
CSN9	YDR179C	MGA2	P40578	1113 aa		5.99	□□□□□ -1.45
CSN9	YDR179C	YPR015C	Q12531	247 aa		5.99	□□□□□ -1.45
CSN9	YDR179C	GUT1	P32190	709 aa		5.98	□□□□□ -1.45
CSN9	YDR179C	MPH3	P0CE00	602 aa		5.96	□□□□□ -1.46
CSN9	YDR179C	AMS1	P22855	1083 aa		5.95	□□□□□ -1.46
CSN9	YDR179C	AI4	P03878	556 aa		5.94	□□□□□ -1.46
CSN9	YDR179C	MPC54	Q08550	464 aa		5.94	□□□□□ -1.46
CSN9	YDR179C	ATH1	P48016	1211 aa		5.93	□□□□□ -1.46
CSN9	YDR179C	EDS1	P38073	919 aa		5.92	□□□□□ -1.46
CSN9	YDR179C	SDH2	P21801	266 aa		5.91	□□□□□ -1.46
CSN9	YDR179C	PTC3	P34221	468 aa	Known RBP	5.91	□□□□□ -1.46
CSN9	YDR179C	RAM1	P22007	431 aa		5.9	□□□□□ -1.46
CSN9	YDR179C	NMA111	P53920	997 aa		5.89	□□□□□ -1.47
CSN9	YDR179C	MIF2	P35201	549 aa		5.84	□□□□□ -1.47
CSN9	YDR179C	GAR1	P28007	205 aa	Known RBP	5.77	□□□□□ -1.49
CSN9	YDR179C	DPL1	Q05567	589 aa		5.77	□□□□□ -1.49
CSN9	YDR179C	GYP1	Q08484	637 aa		5.77	□□□□□ -1.49
CSN9	YDR179C	SLI15	P38283	698 aa		5.76	□□□□□ -1.49
CSN9	YDR179C	MAK11	P20484	414 aa	Known RBP	5.73	□□□□□ -1.49
CSN9	YDR179C	BRE2	P43132	505 aa		5.73	□□□□□ -1.49
CSN9	YDR179C	YGR273C	P53329	174 aa		5.72	□□□□□ -1.49
CSN9	YDR179C	SAS4	Q04003	481 aa		5.7	□□□□□ -1.5
CSN9	YDR179C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
CSN9	YDR179C	AIR1	P40507	360 aa	Known RBP	5.68	□□□□□ -1.5
CSN9	YDR179C	ISU2	Q12056	156 aa		5.68	□□□□□ -1.5
CSN9	YDR179C	YEL077C	Q3E7X8	1277 aa		5.68	□□□□□ -1.5
CSN9	YDR179C	PDR1	P12383	1068 aa		5.67	□□□□□ -1.5
CSN9	YDR179C	RAM2	P29703	316 aa		5.67	□□□□□ -1.5
CSN9	YDR179C	COQ8	P27697	501 aa		5.66	□□□□□ -1.5
CSN9	YDR179C	CLA4	P48562	842 aa		5.64	□□□□□ -1.51
CSN9	YDR179C	MET22	P32179	357 aa		5.62	□□□□□ -1.51
CSN9	YDR179C	GCR2	Q01722	534 aa		5.61	□□□□□ -1.51
CSN9	YDR179C	CDC73	Q06697	393 aa		5.6	□□□□□ -1.51
CSN9	YDR179C	ENV9	Q08651	330 aa		5.56	□□□□□ -1.52
CSN9	YDR179C	YDL176W	Q12027	708 aa		5.56	□□□□□ -1.52
CSN9	YDR179C	MRF1	P30775	413 aa	Predicted RBP	5.55	□□□□□ -1.52
CSN9	YDR179C	CST6	P40535	587 aa		5.55	□□□□□ -1.52
CSN9	YDR179C	BUD20	Q08004	166 aa	Predicted RBP	5.55	□□□□□ -1.52
CSN9	YDR179C	KEX1	P09620	729 aa		5.5	□□□□□ -1.53
CSN9	YDR179C	NOP53	Q12080	455 aa	Known RBP	5.49	□□□□□ -1.53
CSN9	YDR179C	PRT1	P06103	763 aa	Known RBP	5.48	□□□□□ -1.53
CSN9	YDR179C	MTC5	Q03897	1148 aa		5.48	□□□□□ -1.53
CSN9	YDR179C	LAM6	Q08001	693 aa		5.48	□□□□□ -1.53
CSN9	YDR179C	CDC4	P07834	779 aa		5.46	□□□□□ -1.54
CSN9	YDR179C	YDR444W	Q04093	687 aa		5.46	□□□□□ -1.54
CSN9	YDR179C	ERG12	P07277	443 aa		5.44	□□□□□ -1.54
CSN9	YDR179C	STR2	P47164	639 aa		5.43	□□□□□ -1.54
CSN9	YDR179C	ISM1	P48526	1002 aa		5.4	□□□□□ -1.54
CSN9	YDR179C	LCB5	Q06147	687 aa	Known RBP	5.4	□□□□□ -1.54
CSN9	YDR179C	YLR326W	Q06170	240 aa	Known RBP	5.36	□□□□□ -1.55
CSN9	YDR179C	UBP14	P38237	781 aa	Known RBP	5.35	□□□□□ -1.55
CSN9	YDR179C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	5.34	□□□□□ -1.55	not detected
CSN9	YDR179C	FRK1	Q03002	865 aa	Predicted RBP	5.33	□□□□□ -1.56
CSN9	YDR179C	TY1A-DR4	O74302	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-H	P0C2I4	478 aa	Known RBP	5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-A	P0CX57	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-PR1	P0CX58	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-OR	P0CX59	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-PR2	P0CX60	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-DR5	P0CX65	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-ER2	P0CX66	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-GR3	P0CX67	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-LR1	P0CX68	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-MR2	P0CX69	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-JR2	P47099	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-DR1	Q03856	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-ML1	Q04706	440 aa	Known RBP	5.32	□□□□□ -1.56
CSN9	YDR179C	YRR1	Q12172	810 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-BR	Q12217	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-NL2	Q12470	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	TY1A-GR2	Q12485	440 aa		5.32	□□□□□ -1.56
CSN9	YDR179C	SEC2	P17065	759 aa		5.31	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms