RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZRSR1Q15695 479 aaKnown RBP3.66□□□□□ -1.82
SCN1A-219ENST00000641575 CHMP4AQ9BY43 222 aa3.66□□□□□ -1.82
SCN1A-219ENST00000641575 CHMP7Q8WUX9 453 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-219ENST00000641575 UPF2Q9HAU5 1272 aaKnown RBP3.66□□□□□ -1.82
SCN1A-219ENST00000641575 ARID4BQ4LE39 1312 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-219ENST00000641575 AMER1Q5JTC6 1135 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-219ENST00000641575 BCL11AQ9H165 835 aa3.66□□□□□ -1.82
SCN1A-219ENST00000641575 TRIM41Q8WV44 630 aa3.65□□□□□ -1.82
SCN1A-219ENST00000641575 ARXQ96QS3 562 aa3.65□□□□□ -1.82
SCN1A-219ENST00000641575 PRM3Q9NNZ6 103 aa3.65□□□□□ -1.82
SCN1A-219ENST00000641575 NEUROD1Q13562 356 aa3.65□□□□□ -1.83
SCN1A-219ENST00000641575 MYO18AQ92614 2054 aaKnown RBP3.65□□□□□ -1.83
SCN1A-219ENST00000641575 PTMSP20962 102 aa3.64□□□□□ -1.83
SCN1A-219ENST00000641575 ERICH6BQ5W0A0 696 aa3.64□□□□□ -1.83
SCN1A-219ENST00000641575 SF3B2Q13435 895 aaKnown RBP3.64□□□□□ -1.83
SCN1A-219ENST00000641575 CFAP65Q6ZU64 1925 aaKnown RBP3.64□□□□□ -1.83
SCN1A-219ENST00000641575 G3V3G9 751 aa3.64□□□□□ -1.83
SCN1A-219ENST00000641575 DCAF8Q5TAQ9 597 aa3.64□□□□□ -1.83
SCN1A-219ENST00000641575 CNGB1Q14028 1251 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-219ENST00000641575 TRHP20396 242 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-219ENST00000641575 ARID1BQ8NFD5 2236 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-219ENST00000641575 ANP32CO43423 234 aa3.63□□□□□ -1.83
SCN1A-219ENST00000641575 USP35Q9P2H5 1018 aa3.63□□□□□ -1.83
SCN1A-219ENST00000641575 PTMAP06454 111 aaKnown RBP3.62□□□□□ -1.83
SCN1A-219ENST00000641575 CHMP4BQ9H444 224 aaKnown RBP3.62□□□□□ -1.83
SCN1A-219ENST00000641575 PPARGC1BQ86YN6 1023 aaKnown RBP3.62□□□□□ -1.83
SCN1A-219ENST00000641575 PHF23Q9BUL5 403 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-219ENST00000641575 HMGB1P09429 215 aaKnown RBP3.62□□□□□ -1.83
SCN1A-219ENST00000641575 SPAG17Q6Q759 2223 aa3.62□□□□□ -1.83
SCN1A-219ENST00000641575 ZNF318Q5VUA4 2279 aa3.62□□□□□ -1.83
SCN1A-219ENST00000641575 E9PSI1 815 aa3.61□□□□□ -1.83
SCN1A-219ENST00000641575 MYH16Q9H6N6 1097 aa3.61□□□□□ -1.83
SCN1A-219ENST00000641575 ICE1Q9Y2F5 2266 aa3.61□□□□□ -1.83
SCN1A-219ENST00000641575 PLEKHD1A6NEE1 506 aa3.61□□□□□ -1.83
SCN1A-219ENST00000641575 CHAF1AQ13111 956 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-219ENST00000641575 CNKSR2Q8WXI2 1034 aa3.61□□□□□ -1.83
SCN1A-219ENST00000641575 DDRGK1Q96HY6 314 aa3.6□□□□□ -1.83
SCN1A-219ENST00000641575 TNNT3P45378 269 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-219ENST00000641575 NRDCO43847 1150 aa3.6□□□□□ -1.83
SCN1A-219ENST00000641575 DNTTIP2Q5QJE6 756 aaKnown RBP3.6□□□□□ -1.83
SCN1A-219ENST00000641575 WWC2Q6AWC2 1192 aa3.6□□□□□ -1.83
SCN1A-219ENST00000641575 CCDC34Q96HJ3 373 aa3.6□□□□□ -1.83
SCN1A-219ENST00000641575 KIAA2012Q0VF49 1180 aa3.6□□□□□ -1.83
SCN1A-219ENST00000641575 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-219ENST00000641575 BECN1Q14457 450 aa3.59□□□□□ -1.83
SCN1A-219ENST00000641575 CCDC180Q9P1Z9 1646 aa3.59□□□□□ -1.83
SCN1A-219ENST00000641575 GOLGA6L6A8MZA4 724 aa3.59□□□□□ -1.83
SCN1A-219ENST00000641575 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.59□□□□□ -1.83
SCN1A-219ENST00000641575 NUMA1Q14980 2115 aa3.59□□□□□ -1.83
SCN1A-219ENST00000641575 SSFA2P28290 1259 aa3.59□□□□□ -1.83
SCN1A-219ENST00000641575 CFAP44Q96MT7 982 aa3.59□□□□□ -1.83
SCN1A-219ENST00000641575 CWC22Q9HCG8 908 aaKnown RBP3.59□□□□□ -1.83
SCN1A-219ENST00000641575 RTN4Q9NQC3 1192 aaKnown RBP3.59□□□□□ -1.84
SCN1A-219ENST00000641575 NCBP3Q53F19 620 aaKnown RBP3.59□□□□□ -1.84
SCN1A-219ENST00000641575 PNNQ9H307 717 aaKnown RBP3.58□□□□□ -1.84
SCN1A-219ENST00000641575 DIDO1Q9BTC0 2240 aaKnown RBP3.58□□□□□ -1.84
SCN1A-219ENST00000641575 GOLGA6L22H0YM25 854 aa3.58□□□□□ -1.84
SCN1A-219ENST00000641575 PPP1R15AO75807 674 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-219ENST00000641575 MICAL3Q7RTP6 2002 aa3.58□□□□□ -1.84
SCN1A-219ENST00000641575 CASC1Q6TDU7 716 aa3.58□□□□□ -1.84
SCN1A-219ENST00000641575 NEUROD2Q15784 382 aa3.58□□□□□ -1.84
SCN1A-219ENST00000641575 PDE4DIPQ5VU43 2346 aa3.58□□□□□ -1.84
SCN1A-219ENST00000641575 CEP89Q96ST8 783 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 CLSTN1O94985 981 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 WWC1Q8IX03 1113 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 TRIM52Q96A61 297 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 HDAC5Q9UQL6 1122 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 HMGB1P1B2RPK0 211 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-219ENST00000641575 ITGAEP38570 1179 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 CACNA1FO60840 1977 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 PLPPR3Q6T4P5 718 aa3.57□□□□□ -1.84
SCN1A-219ENST00000641575 DCAF1Q9Y4B6 1507 aa3.56□□□□□ -1.84
SCN1A-219ENST00000641575 CEP250Q9BV73 2442 aa3.56□□□□□ -1.84
SCN1A-219ENST00000641575 TRIM21P19474 475 aaKnown RBP3.56□□□□□ -1.84
SCN1A-219ENST00000641575 SETQ01105 290 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-219ENST00000641575 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-219ENST00000641575 NOP2P46087 812 aaKnown RBP3.55□□□□□ -1.84
SCN1A-219ENST00000641575 AMOTL1Q8IY63 956 aa3.55□□□□□ -1.84
SCN1A-219ENST00000641575 SPTA1P02549 2419 aa3.55□□□□□ -1.84
SCN1A-219ENST00000641575 MEX3CQ5U5Q3 659 aaKnown RBP3.55□□□□□ -1.84
SCN1A-219ENST00000641575 CTDP1Q9Y5B0 961 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-219ENST00000641575 MYH9P35579 1960 aaKnown RBP3.54□□□□□ -1.84
SCN1A-219ENST00000641575 CCAR1Q8IX12 1150 aaKnown RBP3.54□□□□□ -1.84
SCN1A-219ENST00000641575 RP1P56715 2156 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 CITO14578 2027 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 CDCA8Q53HL2 280 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 TCEAL9Q9UHQ7 104 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 CHGAP10645 457 aaKnown RBP3.54□□□□□ -1.84
SCN1A-219ENST00000641575 TSPY4P0CV99 314 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 TSPY10P0CW01 314 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 CCDC136Q96JN2 1154 aa3.54□□□□□ -1.84
SCN1A-219ENST00000641575 SRPK2P78362 688 aaKnown RBP3.54□□□□□ -1.84
SCN1A-219ENST00000641575 APPP05067 770 aa3.53□□□□□ -1.84
SCN1A-219ENST00000641575 DNAI2Q9GZS0 605 aa3.53□□□□□ -1.84
SCN1A-219ENST00000641575 CCDC112Q8NEF3 446 aa3.53□□□□□ -1.84
SCN1A-219ENST00000641575 CACNA1GO43497 2377 aa3.53□□□□□ -1.84
SCN1A-219ENST00000641575 TULP1O00294 542 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-219ENST00000641575 PPM1GO15355 546 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-219ENST00000641575 EIF3DO15371 548 aaKnown RBP eCLIP3.53□□□□□ -1.843e-6■■□□□ 11.9
SCN1A-219ENST00000641575 DEKP35659 375 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms