RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ABCA5Q8WWZ7 1642 aa17.54■□□□□ 0.4
CLN6-217ENST00000636964 CUL7Q14999 1698 aa17.51■□□□□ 0.39
CLN6-217ENST00000636964 KANK4Q5T7N3 995 aaPredicted RBP17.48■□□□□ 0.39
CLN6-217ENST00000636964 ZNF608Q9ULD9 1512 aaPredicted RBP17.47■□□□□ 0.39
CLN6-217ENST00000636964 WDR62O43379 1518 aa17.46■□□□□ 0.39
CLN6-217ENST00000636964 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.46■□□□□ 0.39
CLN6-217ENST00000636964 ATP1B4Q9UN42 357 aaPredicted RBP17.44■□□□□ 0.38
CLN6-217ENST00000636964 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
CLN6-217ENST00000636964 IFT140Q96RY7 1462 aa17.42■□□□□ 0.38
CLN6-217ENST00000636964 FHOD3Q2V2M9 1422 aa17.41■□□□□ 0.38
CLN6-217ENST00000636964 PBRM1Q86U86 1689 aa17.39■□□□□ 0.37
CLN6-217ENST00000636964 CTTNBP2Q8WZ74 1663 aa17.38■□□□□ 0.37
CLN6-217ENST00000636964 THOC2Q8NI27 1593 aaKnown RBP17.37■□□□□ 0.37
CLN6-217ENST00000636964 GRIN2BQ13224 1484 aa17.37■□□□□ 0.37
CLN6-217ENST00000636964 ZEB1P37275 1124 aaPredicted RBP17.37■□□□□ 0.37
CLN6-217ENST00000636964 CCER1Q8TC90 406 aaPredicted RBP17.36■□□□□ 0.37
CLN6-217ENST00000636964 FHAD1B1AJZ9 1412 aa17.36■□□□□ 0.37
CLN6-217ENST00000636964 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
CLN6-217ENST00000636964 AEBP2Q6ZN18 517 aaPredicted RBP17.31■□□□□ 0.36
CLN6-217ENST00000636964 ADAMTS12P58397 1594 aa17.31■□□□□ 0.36
CLN6-217ENST00000636964 NEUROD1Q13562 356 aa17.3■□□□□ 0.36
CLN6-217ENST00000636964 EIF4G3O43432 1585 aaKnown RBP17.3■□□□□ 0.36
CLN6-217ENST00000636964 SNAPC4Q5SXM2 1469 aa17.29■□□□□ 0.36
CLN6-217ENST00000636964 FBLN2P98095 1184 aa17.29■□□□□ 0.36
CLN6-217ENST00000636964 EFCAB5A4FU69 1503 aa17.29■□□□□ 0.36
CLN6-217ENST00000636964 PCF11O94913 1555 aaKnown RBP17.28■□□□□ 0.36
CLN6-217ENST00000636964 ACIN1Q9UKV3 1341 aaKnown RBP17.28■□□□□ 0.36
CLN6-217ENST00000636964 TIAM1Q13009 1591 aa17.25■□□□□ 0.35
CLN6-217ENST00000636964 CHMP7Q8WUX9 453 aaPredicted RBP17.24■□□□□ 0.35
CLN6-217ENST00000636964 FMN1Q68DA7 1419 aa17.22■□□□□ 0.35
CLN6-217ENST00000636964 ITGAEP38570 1179 aa17.21■□□□□ 0.35
CLN6-217ENST00000636964 SAMD9Q5K651 1589 aa17.21■□□□□ 0.35
CLN6-217ENST00000636964 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
CLN6-217ENST00000636964 LRRC9Q6ZRR7 1453 aa17.21■□□□□ 0.35
CLN6-217ENST00000636964 IQGAP2Q13576 1575 aa17.2■□□□□ 0.34
CLN6-217ENST00000636964 FYCO1Q9BQS8 1478 aa17.19■□□□□ 0.34
CLN6-217ENST00000636964 GRIN2AQ12879 1464 aa17.18■□□□□ 0.34
CLN6-217ENST00000636964 MAP3K1Q13233 1512 aa17.18■□□□□ 0.34
CLN6-217ENST00000636964 ARID3CA6NKF2 412 aa17.16■□□□□ 0.34
CLN6-217ENST00000636964 CCNB3Q8WWL7 1395 aa17.15■□□□□ 0.34
CLN6-217ENST00000636964 GTF3C3Q9Y5Q9 886 aa17.15■□□□□ 0.34
CLN6-217ENST00000636964 RRBP1Q9P2E9 1410 aaKnown RBP17.15■□□□□ 0.34
CLN6-217ENST00000636964 MAGI1Q96QZ7 1491 aaPredicted RBP17.15■□□□□ 0.34
CLN6-217ENST00000636964 PHLDB1Q86UU1 1377 aa17.15■□□□□ 0.34
CLN6-217ENST00000636964 CFAP43Q8NDM7 1665 aa17.13■□□□□ 0.33
CLN6-217ENST00000636964 KIAA0586Q9BVV6 1533 aa17.13■□□□□ 0.33
CLN6-217ENST00000636964 SYNJ2O15056 1496 aa17.13■□□□□ 0.33
CLN6-217ENST00000636964 FAM50AQ14320 339 aaKnown RBP17.11■□□□□ 0.33
CLN6-217ENST00000636964 MTUS2Q5JR59 1369 aa17.09■□□□□ 0.33
CLN6-217ENST00000636964 UGGT2Q9NYU1 1516 aa17.08■□□□□ 0.32
CLN6-217ENST00000636964 LRRIQ1Q96JM4 1722 aa17.08■□□□□ 0.32
CLN6-217ENST00000636964 CEP170Q5SW79 1584 aa17.08■□□□□ 0.32
CLN6-217ENST00000636964 DISP1Q96F81 1524 aa17.06■□□□□ 0.32
CLN6-217ENST00000636964 JPH4Q96JJ6 628 aa17.04■□□□□ 0.32
CLN6-217ENST00000636964 KIAA0556O60303 1618 aa17.02■□□□□ 0.31
CLN6-217ENST00000636964 NUP160Q12769 1436 aa17■□□□□ 0.31
CLN6-217ENST00000636964 CDK13Q14004 1512 aaKnown RBP17■□□□□ 0.31
CLN6-217ENST00000636964 EPRSP07814 1512 aaKnown RBP16.98■□□□□ 0.31
CLN6-217ENST00000636964 MAGI3Q5TCQ9 1506 aa16.98■□□□□ 0.31
CLN6-217ENST00000636964 HECW1Q76N89 1606 aa16.97■□□□□ 0.31
CLN6-217ENST00000636964 NCOA2Q15596 1464 aa16.96■□□□□ 0.31
CLN6-217ENST00000636964 CCDC18Q5T9S5 1454 aa16.95■□□□□ 0.3
CLN6-217ENST00000636964 FGD6Q6ZV73 1430 aa16.94■□□□□ 0.3
CLN6-217ENST00000636964 DHX57Q6P158 1386 aaKnown RBP16.93■□□□□ 0.3
CLN6-217ENST00000636964 CARMIL2Q6F5E8 1435 aa16.92■□□□□ 0.3
CLN6-217ENST00000636964 EHBP1L1Q8N3D4 1523 aa16.92■□□□□ 0.3
CLN6-217ENST00000636964 DAXXQ9UER7 740 aaPredicted RBP16.92■□□□□ 0.3
CLN6-217ENST00000636964 PLB1Q6P1J6 1458 aa16.92■□□□□ 0.3
CLN6-217ENST00000636964 RAB3GAP2Q9H2M9 1393 aa16.91■□□□□ 0.3
CLN6-217ENST00000636964 NUP153P49790 1475 aaKnown RBP16.91■□□□□ 0.3
CLN6-217ENST00000636964 SUPT6HQ7KZ85 1726 aaKnown RBP16.9■□□□□ 0.3
CLN6-217ENST00000636964 MYOM3Q5VTT5 1437 aa16.89■□□□□ 0.3
CLN6-217ENST00000636964 CHD1O14646 1710 aa16.89■□□□□ 0.29
CLN6-217ENST00000636964 RAPGEF6Q8TEU7 1601 aa16.89■□□□□ 0.29
CLN6-217ENST00000636964 DIEXFQ68CQ4 756 aaKnown RBP16.89■□□□□ 0.29
CLN6-217ENST00000636964 SETD5Q9C0A6 1442 aa16.87■□□□□ 0.29
CLN6-217ENST00000636964 PRG4Q92954 1404 aaPredicted RBP16.87■□□□□ 0.29
CLN6-217ENST00000636964 CENPBP07199 599 aaPredicted RBP16.86■□□□□ 0.29
CLN6-217ENST00000636964 CDK11AQ9UQ88 783 aaPredicted RBP16.84■□□□□ 0.29
CLN6-217ENST00000636964 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.84■□□□□ 0.291e-10■■□□□ 12.6
CLN6-217ENST00000636964 PTPRKQ15262 1439 aa16.83■□□□□ 0.29
CLN6-217ENST00000636964 ARHGEF11O15085 1522 aa16.82■□□□□ 0.28
CLN6-217ENST00000636964 CHIC2Q9UKJ5 165 aa16.82■□□□□ 0.28
CLN6-217ENST00000636964 PTPN23Q9H3S7 1636 aa16.8■□□□□ 0.28
CLN6-217ENST00000636964 PTPRGP23470 1445 aa16.79■□□□□ 0.28
CLN6-217ENST00000636964 ZNF644Q9H582 1327 aaPredicted RBP16.77■□□□□ 0.28
CLN6-217ENST00000636964 CLSPNQ9HAW4 1339 aa16.77■□□□□ 0.28
CLN6-217ENST00000636964 RRP7BPQ9NSQ0 103 aa16.77■□□□□ 0.27
CLN6-217ENST00000636964 PLEKHD1A6NEE1 506 aa16.75■□□□□ 0.27
CLN6-217ENST00000636964 TROQ12816 1431 aaPredicted RBP16.74■□□□□ 0.27
CLN6-217ENST00000636964 ABCA8O94911 1581 aa16.74■□□□□ 0.27
CLN6-217ENST00000636964 ERCC6L2Q5T890 1561 aa16.74■□□□□ 0.27
CLN6-217ENST00000636964 ATP10BO94823 1461 aa16.73■□□□□ 0.27
CLN6-217ENST00000636964 ZNF777Q9ULD5 760 aaPredicted RBP16.73■□□□□ 0.27
CLN6-217ENST00000636964 MIA2Q96PC5 1412 aa16.72■□□□□ 0.27
CLN6-217ENST00000636964 TCOF1Q13428 1488 aaKnown RBP16.71■□□□□ 0.27
CLN6-217ENST00000636964 SIN3AQ96ST3 1273 aa16.71■□□□□ 0.27
CLN6-217ENST00000636964 CFDP1Q9UEE9 299 aaPredicted RBP16.7■□□□□ 0.26
CLN6-217ENST00000636964 MAPKBP1O60336 1514 aa16.7■□□□□ 0.26
CLN6-217ENST00000636964 ZNF316A6NFI3 1004 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms