RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KDM6BO15054 1643 aa26.77■■□□□ 1.88
CLN3-249ENST00000636685 JPH4Q96JJ6 628 aa26.75■■□□□ 1.87
CLN3-249ENST00000636685 MAPKBP1O60336 1514 aa26.75■■□□□ 1.87
CLN3-249ENST00000636685 NPM1P06748 294 aaKnown RBP eCLIP26.74■■□□□ 1.87
CLN3-249ENST00000636685 TSPOAP1O95153 1857 aa26.73■■□□□ 1.87
CLN3-249ENST00000636685 ERICH3Q5RHP9 1530 aa26.7■■□□□ 1.87
CLN3-249ENST00000636685 ADCY10Q96PN6 1610 aa26.68■■□□□ 1.86
CLN3-249ENST00000636685 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
CLN3-249ENST00000636685 TOP2BQ02880 1626 aa26.63■■□□□ 1.85
CLN3-249ENST00000636685 RUSC2Q8N2Y8 1516 aa26.63■■□□□ 1.85
CLN3-249ENST00000636685 ADGRL1O94910 1474 aa26.47■■□□□ 1.83
CLN3-249ENST00000636685 PPRC1Q5VV67 1664 aaKnown RBP26.41■■□□□ 1.82
CLN3-249ENST00000636685 HECW2Q9P2P5 1572 aa26.39■■□□□ 1.82
CLN3-249ENST00000636685 KIAA0586Q9BVV6 1533 aa26.37■■□□□ 1.81
CLN3-249ENST00000636685 TTBK1Q5TCY1 1321 aaPredicted RBP26.32■■□□□ 1.8
CLN3-249ENST00000636685 PTPRGP23470 1445 aa26.31■■□□□ 1.8
CLN3-249ENST00000636685 GLI2P10070 1586 aa26.29■■□□□ 1.8
CLN3-249ENST00000636685 SUPT5HO00267 1087 aaKnown RBP26.29■■□□□ 1.8
CLN3-249ENST00000636685 ASXL2Q76L83 1435 aa26.29■■□□□ 1.8
CLN3-249ENST00000636685 COL17A1Q9UMD9 1497 aaPredicted RBP26.28■■□□□ 1.8
CLN3-249ENST00000636685 ABCC2Q92887 1545 aa26.27■■□□□ 1.8
CLN3-249ENST00000636685 PLB1Q6P1J6 1458 aa26.25■■□□□ 1.79
CLN3-249ENST00000636685 CUL7Q14999 1698 aa26.23■■□□□ 1.79
CLN3-249ENST00000636685 IGF1RP08069 1367 aa26.2■■□□□ 1.78
CLN3-249ENST00000636685 TNIKQ9UKE5 1360 aa26.18■■□□□ 1.78
CLN3-249ENST00000636685 MAP3K4Q9Y6R4 1608 aa26.14■■□□□ 1.78
CLN3-249ENST00000636685 CARMIL2Q6F5E8 1435 aa26.13■■□□□ 1.77
CLN3-249ENST00000636685 EPRSP07814 1512 aaKnown RBP26.12■■□□□ 1.77
CLN3-249ENST00000636685 UHRF1BP1LA0JNW5 1464 aa26.11■■□□□ 1.77
CLN3-249ENST00000636685 TEX14Q8IWB6 1497 aa26.09■■□□□ 1.77
CLN3-249ENST00000636685 UACAQ9BZF9 1416 aa26.07■■□□□ 1.76
CLN3-249ENST00000636685 KIF27Q86VH2 1401 aa26.06■■□□□ 1.76
CLN3-249ENST00000636685 FBXO41Q8TF61 875 aa26.06■■□□□ 1.76
CLN3-249ENST00000636685 KDM5BQ9UGL1 1544 aa26.02■■□□□ 1.76
CLN3-249ENST00000636685 IQGAP2Q13576 1575 aa26.02■■□□□ 1.76
CLN3-249ENST00000636685 ZCCHC11Q5TAX3 1644 aaKnown RBP26.01■■□□□ 1.75
CLN3-249ENST00000636685 CARMIL1Q5VZK9 1371 aa25.99■■□□□ 1.75
CLN3-249ENST00000636685 DISP1Q96F81 1524 aa25.98■■□□□ 1.75
CLN3-249ENST00000636685 KIF21BO75037 1637 aa25.88■■□□□ 1.73
CLN3-249ENST00000636685 WDR7Q9Y4E6 1490 aa25.87■■□□□ 1.73
CLN3-249ENST00000636685 CD109Q6YHK3 1445 aa25.82■■□□□ 1.72
CLN3-249ENST00000636685 MAGI3Q5TCQ9 1506 aa25.82■■□□□ 1.72
CLN3-249ENST00000636685 CFAP43Q8NDM7 1665 aa25.81■■□□□ 1.72
CLN3-249ENST00000636685 UGGT2Q9NYU1 1516 aa25.81■■□□□ 1.72
CLN3-249ENST00000636685 KIAA0556O60303 1618 aa25.81■■□□□ 1.72
CLN3-249ENST00000636685 KCNH8Q96L42 1107 aa25.77■■□□□ 1.72
CLN3-249ENST00000636685 PTPRMP28827 1452 aa25.72■■□□□ 1.71
CLN3-249ENST00000636685 ADAMTSL3P82987 1691 aa25.7■■□□□ 1.7
CLN3-249ENST00000636685 RAPGEF2Q9Y4G8 1499 aa25.66■■□□□ 1.7
CLN3-249ENST00000636685 ARAP3Q8WWN8 1544 aa25.64■■□□□ 1.7
CLN3-249ENST00000636685 LMTK3Q96Q04 1460 aa25.63■■□□□ 1.69
CLN3-249ENST00000636685 ABCA8O94911 1581 aa25.62■■□□□ 1.69
CLN3-249ENST00000636685 PCF11O94913 1555 aaKnown RBP25.61■■□□□ 1.69
CLN3-249ENST00000636685 MADDQ8WXG6 1647 aa25.55■■□□□ 1.68
CLN3-249ENST00000636685 BCORL1Q5H9F3 1711 aa25.55■■□□□ 1.68
CLN3-249ENST00000636685 CTTNBP2Q8WZ74 1663 aa25.54■■□□□ 1.68
CLN3-249ENST00000636685 RAPGEF3O95398 923 aa25.52■■□□□ 1.68
CLN3-249ENST00000636685 GOLGA3Q08378 1498 aa25.5■■□□□ 1.67
CLN3-249ENST00000636685 ARID4BQ4LE39 1312 aaPredicted RBP25.48■■□□□ 1.67
CLN3-249ENST00000636685 ARID3CA6NKF2 412 aa25.48■■□□□ 1.67
CLN3-249ENST00000636685 RIMS1Q86UR5 1692 aaKnown RBP25.45■■□□□ 1.67
CLN3-249ENST00000636685 PHLDB1Q86UU1 1377 aa25.45■■□□□ 1.67
CLN3-249ENST00000636685 ABCA9Q8IUA7 1624 aa25.45■■□□□ 1.67
CLN3-249ENST00000636685 HSPA2P54652 639 aa25.45■■□□□ 1.66
CLN3-249ENST00000636685 FRMPD1Q5SYB0 1578 aa25.43■■□□□ 1.66
CLN3-249ENST00000636685 ILDR2Q71H61 639 aa25.41■■□□□ 1.66
CLN3-249ENST00000636685 CERKQ8TCT0 537 aa25.41■■□□□ 1.66
CLN3-249ENST00000636685 ATP10BO94823 1461 aa25.4■■□□□ 1.66
CLN3-249ENST00000636685 NEO1Q92859 1461 aa25.38■■□□□ 1.65
CLN3-249ENST00000636685 PLPPR3Q6T4P5 718 aa25.37■■□□□ 1.65
CLN3-249ENST00000636685 DISP3Q9P2K9 1392 aa25.35■■□□□ 1.65
CLN3-249ENST00000636685 SOCS7O14512 581 aa25.34■■□□□ 1.65
CLN3-249ENST00000636685 ARHGEF40Q8TER5 1519 aa25.32■■□□□ 1.64
CLN3-249ENST00000636685 P3H3Q8IVL6 736 aa25.3■■□□□ 1.64
CLN3-249ENST00000636685 RICTORQ6R327 1708 aa25.26■■□□□ 1.63
CLN3-249ENST00000636685 FAM9AQ8IZU1 332 aaPredicted RBP25.24■■□□□ 1.63
CLN3-249ENST00000636685 SIGLEC1Q9BZZ2 1709 aa25.23■■□□□ 1.63
CLN3-249ENST00000636685 DENND4BO75064 1496 aaPredicted RBP25.21■■□□□ 1.63
CLN3-249ENST00000636685 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.2■■□□□ 1.62
CLN3-249ENST00000636685 HNRNPUL2Q1KMD3 747 aaKnown RBP25.2■■□□□ 1.62
CLN3-249ENST00000636685 RAPGEF6Q8TEU7 1601 aa25.19■■□□□ 1.62
CLN3-249ENST00000636685 FANCAO15360 1455 aa25.19■■□□□ 1.62
CLN3-249ENST00000636685 POGZQ7Z3K3 1410 aa25.19■■□□□ 1.62
CLN3-249ENST00000636685 PRXQ9BXM0 1461 aa25.18■■□□□ 1.62
CLN3-249ENST00000636685 FER1L4A9Z1Z3 1794 aa25.17■■□□□ 1.62
CLN3-249ENST00000636685 AKNAQ7Z591 1439 aa25.17■■□□□ 1.62
CLN3-249ENST00000636685 FHOD3Q2V2M9 1422 aa25.16■■□□□ 1.62
CLN3-249ENST00000636685 MLECQ14165 292 aa25.15■■□□□ 1.62
CLN3-249ENST00000636685 YEATS2Q9ULM3 1422 aa25.13■■□□□ 1.61
CLN3-249ENST00000636685 ZFYVE16Q7Z3T8 1539 aa25.12■■□□□ 1.61
CLN3-249ENST00000636685 TTC37Q6PGP7 1564 aa25.12■■□□□ 1.61
CLN3-249ENST00000636685 ZMYM4Q5VZL5 1548 aa25.12■■□□□ 1.61
CLN3-249ENST00000636685 SPATA31D1Q6ZQQ2 1576 aa25.11■■□□□ 1.61
CLN3-249ENST00000636685 SAMD9Q5K651 1589 aa25.1■■□□□ 1.61
CLN3-249ENST00000636685 EFCAB5A4FU69 1503 aa25.09■■□□□ 1.61
CLN3-249ENST00000636685 PREX1Q8TCU6 1659 aa25.09■■□□□ 1.61
CLN3-249ENST00000636685 CFAP74Q9C0B2 1584 aa25.09■■□□□ 1.61
CLN3-249ENST00000636685 NUP153P49790 1475 aaKnown RBP25.09■■□□□ 1.61
CLN3-249ENST00000636685 STRCQ7RTU9 1775 aa25.08■■□□□ 1.6
CLN3-249ENST00000636685 HECW1Q76N89 1606 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms