RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 RANGAP1P46060 587 aaPredicted RBP23.87■■□□□ 1.41
LIMS3-206ENST00000631420 CEP170Q5SW79 1584 aa23.87■■□□□ 1.41
LIMS3-206ENST00000631420 OSCARQ8IYS5 282 aa23.82■■□□□ 1.4
LIMS3-206ENST00000631420 KIAA0586Q9BVV6 1533 aa23.81■■□□□ 1.4
LIMS3-206ENST00000631420 CTTNBP2Q8WZ74 1663 aa23.75■■□□□ 1.39
LIMS3-206ENST00000631420 JPH4Q96JJ6 628 aa23.74■■□□□ 1.39
LIMS3-206ENST00000631420 CEP162Q5TB80 1403 aa23.74■■□□□ 1.39
LIMS3-206ENST00000631420 IQGAP2Q13576 1575 aa23.73■■□□□ 1.39
LIMS3-206ENST00000631420 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
LIMS3-206ENST00000631420 CLIP1P30622 1438 aa23.69■■□□□ 1.38
LIMS3-206ENST00000631420 P3H3Q8IVL6 736 aa23.68■■□□□ 1.38
LIMS3-206ENST00000631420 UGGT2Q9NYU1 1516 aa23.63■■□□□ 1.37
LIMS3-206ENST00000631420 ARHGAP35Q9NRY4 1499 aa23.62■■□□□ 1.37
LIMS3-206ENST00000631420 PRG4Q92954 1404 aaPredicted RBP23.6■■□□□ 1.37
LIMS3-206ENST00000631420 DISP1Q96F81 1524 aa23.58■■□□□ 1.37
LIMS3-206ENST00000631420 SHROOM2Q13796 1616 aa23.56■■□□□ 1.36
LIMS3-206ENST00000631420 FHOD3Q2V2M9 1422 aa23.55■■□□□ 1.36
LIMS3-206ENST00000631420 ARAP1Q96P48 1450 aa23.54■■□□□ 1.36
LIMS3-206ENST00000631420 SAMD9Q5K651 1589 aa23.54■■□□□ 1.36
LIMS3-206ENST00000631420 EFCAB5A4FU69 1503 aa23.53■■□□□ 1.36
LIMS3-206ENST00000631420 CARMIL2Q6F5E8 1435 aa23.53■■□□□ 1.36
LIMS3-206ENST00000631420 TTBK1Q5TCY1 1321 aaPredicted RBP23.53■■□□□ 1.36
LIMS3-206ENST00000631420 ERCC6L2Q5T890 1561 aa23.52■■□□□ 1.36
LIMS3-206ENST00000631420 KIAA0556O60303 1618 aa23.5■■□□□ 1.35
LIMS3-206ENST00000631420 PTPRGP23470 1445 aa23.4■■□□□ 1.34
LIMS3-206ENST00000631420 VPS8Q8N3P4 1428 aa23.38■■□□□ 1.33
LIMS3-206ENST00000631420 FMN1Q68DA7 1419 aa23.36■■□□□ 1.33
LIMS3-206ENST00000631420 ARHGEF11O15085 1522 aa23.36■■□□□ 1.33
LIMS3-206ENST00000631420 ATP1B4Q9UN42 357 aaPredicted RBP23.33■■□□□ 1.33
LIMS3-206ENST00000631420 PLB1Q6P1J6 1458 aa23.3■■□□□ 1.32
LIMS3-206ENST00000631420 RIMBP3CA6NJZ7 1639 aa23.27■■□□□ 1.32
LIMS3-206ENST00000631420 RIMBP3BA6NNM3 1639 aa23.27■■□□□ 1.32
LIMS3-206ENST00000631420 RIMBP3Q9UFD9 1639 aa23.27■■□□□ 1.32
LIMS3-206ENST00000631420 CASKIN1Q8WXD9 1431 aa23.27■■□□□ 1.32
LIMS3-206ENST00000631420 ARID3CA6NKF2 412 aa23.25■■□□□ 1.31
LIMS3-206ENST00000631420 PCF11O94913 1555 aaKnown RBP23.24■■□□□ 1.31
LIMS3-206ENST00000631420 CYB5RLQ6IPT4 315 aa23.24■■□□□ 1.31
LIMS3-206ENST00000631420 UACAQ9BZF9 1416 aa23.24■■□□□ 1.31
LIMS3-206ENST00000631420 DNAJC5Q9H3Z4 198 aa23.23■■□□□ 1.31
LIMS3-206ENST00000631420 ABCA8O94911 1581 aa23.22■■□□□ 1.31
LIMS3-206ENST00000631420 FYCO1Q9BQS8 1478 aa23.2■■□□□ 1.31
LIMS3-206ENST00000631420 RAPGEF6Q8TEU7 1601 aa23.2■■□□□ 1.3
LIMS3-206ENST00000631420 NUP153P49790 1475 aaKnown RBP23.18■■□□□ 1.3
LIMS3-206ENST00000631420 APLP2Q06481 763 aa23.15■■□□□ 1.3
LIMS3-206ENST00000631420 PPARGC1BQ86YN6 1023 aaKnown RBP23.15■■□□□ 1.3
LIMS3-206ENST00000631420 ABCC2Q92887 1545 aa23.13■■□□□ 1.29
LIMS3-206ENST00000631420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.13■■□□□ 1.29
LIMS3-206ENST00000631420 HNRNPUL2Q1KMD3 747 aaKnown RBP23.13■■□□□ 1.29
LIMS3-206ENST00000631420 UHRF1BP1LA0JNW5 1464 aa23.13■■□□□ 1.29
LIMS3-206ENST00000631420 HECW1Q76N89 1606 aa23.13■■□□□ 1.29
LIMS3-206ENST00000631420 EPRSP07814 1512 aaKnown RBP23.12■■□□□ 1.29
LIMS3-206ENST00000631420 ATP10BO94823 1461 aa23.11■■□□□ 1.29
LIMS3-206ENST00000631420 KANK4Q5T7N3 995 aaPredicted RBP23.1■■□□□ 1.29
LIMS3-206ENST00000631420 CDK13Q14004 1512 aaKnown RBP23.1■■□□□ 1.29
LIMS3-206ENST00000631420 ADCY10Q96PN6 1610 aa23.09■■□□□ 1.29
LIMS3-206ENST00000631420 LRRIQ1Q96JM4 1722 aa23.08■■□□□ 1.29
LIMS3-206ENST00000631420 CCDC18Q5T9S5 1454 aa23.06■■□□□ 1.28
LIMS3-206ENST00000631420 TIAM1Q13009 1591 aa23.04■■□□□ 1.28
LIMS3-206ENST00000631420 KDM5BQ9UGL1 1544 aa23.04■■□□□ 1.28
LIMS3-206ENST00000631420 MAP3K1Q13233 1512 aa23.03■■□□□ 1.28
LIMS3-206ENST00000631420 NPM1P06748 294 aaKnown RBP eCLIP23.01■■□□□ 1.27
LIMS3-206ENST00000631420 PLEKHD1A6NEE1 506 aa22.98■■□□□ 1.27
LIMS3-206ENST00000631420 CDK11AQ9UQ88 783 aaPredicted RBP22.98■■□□□ 1.27
LIMS3-206ENST00000631420 LRRC9Q6ZRR7 1453 aa22.98■■□□□ 1.27
LIMS3-206ENST00000631420 MAGI3Q5TCQ9 1506 aa22.98■■□□□ 1.27
LIMS3-206ENST00000631420 CFAP43Q8NDM7 1665 aa22.97■■□□□ 1.27
LIMS3-206ENST00000631420 MTUS2Q5JR59 1369 aa22.96■■□□□ 1.27
LIMS3-206ENST00000631420 ZCCHC11Q5TAX3 1644 aaKnown RBP22.96■■□□□ 1.27
LIMS3-206ENST00000631420 TROQ12816 1431 aaPredicted RBP22.9■■□□□ 1.26
LIMS3-206ENST00000631420 KCNH8Q96L42 1107 aa22.89■■□□□ 1.26
LIMS3-206ENST00000631420 ASXL2Q76L83 1435 aa22.88■■□□□ 1.25
LIMS3-206ENST00000631420 EHBP1L1Q8N3D4 1523 aa22.86■■□□□ 1.25
LIMS3-206ENST00000631420 WDR7Q9Y4E6 1490 aa22.83■■□□□ 1.24
LIMS3-206ENST00000631420 NCOA2Q15596 1464 aa22.81■■□□□ 1.24
LIMS3-206ENST00000631420 KIF14Q15058 1648 aa22.78■■□□□ 1.24
LIMS3-206ENST00000631420 PHLDB1Q86UU1 1377 aa22.78■■□□□ 1.24
LIMS3-206ENST00000631420 MAPKBP1O60336 1514 aa22.78■■□□□ 1.24
LIMS3-206ENST00000631420 SUPT6HQ7KZ85 1726 aaKnown RBP22.76■■□□□ 1.23
LIMS3-206ENST00000631420 ABCC10Q5T3U5 1492 aa22.74■■□□□ 1.23
LIMS3-206ENST00000631420 CCNB3Q8WWL7 1395 aa22.71■■□□□ 1.23
LIMS3-206ENST00000631420 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.71■■□□□ 1.23
LIMS3-206ENST00000631420 GPATCH8Q9UKJ3 1502 aaKnown RBP22.68■■□□□ 1.22
LIMS3-206ENST00000631420 FAM69CQ0P6D2 419 aa22.67■■□□□ 1.22
LIMS3-206ENST00000631420 TTC37Q6PGP7 1564 aa22.67■■□□□ 1.22
LIMS3-206ENST00000631420 MYOM3Q5VTT5 1437 aa22.66■■□□□ 1.22
LIMS3-206ENST00000631420 CFDP1Q9UEE9 299 aaPredicted RBP22.63■■□□□ 1.21
LIMS3-206ENST00000631420 FGD6Q6ZV73 1430 aa22.61■■□□□ 1.21
LIMS3-206ENST00000631420 ABCA9Q8IUA7 1624 aa22.61■■□□□ 1.21
LIMS3-206ENST00000631420 ZNF777Q9ULD5 760 aaPredicted RBP22.61■■□□□ 1.21
LIMS3-206ENST00000631420 ZNF644Q9H582 1327 aaPredicted RBP22.61■■□□□ 1.21
LIMS3-206ENST00000631420 PLCH2O75038 1416 aa22.61■■□□□ 1.21
LIMS3-206ENST00000631420 TRIM26Q12899 539 aaPredicted RBP22.6■■□□□ 1.21
LIMS3-206ENST00000631420 CD109Q6YHK3 1445 aa22.6■■□□□ 1.21
LIMS3-206ENST00000631420 DIP2BQ9P265 1576 aa22.6■■□□□ 1.21
LIMS3-206ENST00000631420 RRBP1Q9P2E9 1410 aaKnown RBP22.59■■□□□ 1.21
LIMS3-206ENST00000631420 FAM50AQ14320 339 aaKnown RBP22.59■■□□□ 1.21
LIMS3-206ENST00000631420 MIA2Q96PC5 1412 aa22.58■■□□□ 1.2
LIMS3-206ENST00000631420 GLI2P10070 1586 aa22.58■■□□□ 1.2
LIMS3-206ENST00000631420 CDC42BPAQ5VT25 1732 aa22.57■■□□□ 1.2
LIMS3-206ENST00000631420 EFCAB2Q5VUJ9 269 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms