RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 NPM1P06748 294 aaKnown RBP eCLIP25.71■■□□□ 1.71
SNX1-214ENST00000625244 KDM6BO15054 1643 aa25.7■■□□□ 1.71
SNX1-214ENST00000625244 MAPKBP1O60336 1514 aa25.69■■□□□ 1.7
SNX1-214ENST00000625244 WRNQ14191 1432 aaPredicted RBP eCLIP25.68■■□□□ 1.7
SNX1-214ENST00000625244 ADCY10Q96PN6 1610 aa25.59■■□□□ 1.69
SNX1-214ENST00000625244 ERICH3Q5RHP9 1530 aa25.58■■□□□ 1.68
SNX1-214ENST00000625244 TSPOAP1O95153 1857 aa25.56■■□□□ 1.68
SNX1-214ENST00000625244 RUSC2Q8N2Y8 1516 aa25.49■■□□□ 1.67
SNX1-214ENST00000625244 ADGRL1O94910 1474 aa25.47■■□□□ 1.67
SNX1-214ENST00000625244 TOP2BQ02880 1626 aa25.45■■□□□ 1.67
SNX1-214ENST00000625244 BIVM-ERCC5R4GMW8 1640 aa25.43■■□□□ 1.66
SNX1-214ENST00000625244 HECW2Q9P2P5 1572 aa25.41■■□□□ 1.66
SNX1-214ENST00000625244 PPRC1Q5VV67 1664 aaKnown RBP25.3■■□□□ 1.64
SNX1-214ENST00000625244 COL17A1Q9UMD9 1497 aaPredicted RBP25.29■■□□□ 1.64
SNX1-214ENST00000625244 KIAA0586Q9BVV6 1533 aa25.29■■□□□ 1.64
SNX1-214ENST00000625244 PTPRGP23470 1445 aa25.27■■□□□ 1.64
SNX1-214ENST00000625244 TTBK1Q5TCY1 1321 aaPredicted RBP25.25■■□□□ 1.63
SNX1-214ENST00000625244 ASXL2Q76L83 1435 aa25.25■■□□□ 1.63
SNX1-214ENST00000625244 GLI2P10070 1586 aa25.23■■□□□ 1.63
SNX1-214ENST00000625244 ABCC2Q92887 1545 aa25.22■■□□□ 1.63
SNX1-214ENST00000625244 PLB1Q6P1J6 1458 aa25.21■■□□□ 1.63
SNX1-214ENST00000625244 FBXO41Q8TF61 875 aa25.19■■□□□ 1.62
SNX1-214ENST00000625244 IGF1RP08069 1367 aa25.13■■□□□ 1.61
SNX1-214ENST00000625244 TNIKQ9UKE5 1360 aa25.13■■□□□ 1.61
SNX1-214ENST00000625244 SUPT5HO00267 1087 aaKnown RBP25.1■■□□□ 1.61
SNX1-214ENST00000625244 EPRSP07814 1512 aaKnown RBP25.09■■□□□ 1.61
SNX1-214ENST00000625244 CUL7Q14999 1698 aa25.07■■□□□ 1.6
SNX1-214ENST00000625244 MAP3K4Q9Y6R4 1608 aa25.06■■□□□ 1.6
SNX1-214ENST00000625244 UHRF1BP1LA0JNW5 1464 aa25.06■■□□□ 1.6
SNX1-214ENST00000625244 TEX14Q8IWB6 1497 aa25.06■■□□□ 1.6
SNX1-214ENST00000625244 CARMIL2Q6F5E8 1435 aa25.05■■□□□ 1.6
SNX1-214ENST00000625244 UACAQ9BZF9 1416 aa25.03■■□□□ 1.6
SNX1-214ENST00000625244 KDM5BQ9UGL1 1544 aa24.97■■□□□ 1.59
SNX1-214ENST00000625244 KIF27Q86VH2 1401 aa24.96■■□□□ 1.59
SNX1-214ENST00000625244 CARMIL1Q5VZK9 1371 aa24.91■■□□□ 1.58
SNX1-214ENST00000625244 DISP1Q96F81 1524 aa24.9■■□□□ 1.58
SNX1-214ENST00000625244 ZCCHC11Q5TAX3 1644 aaKnown RBP24.89■■□□□ 1.57
SNX1-214ENST00000625244 IQGAP2Q13576 1575 aa24.88■■□□□ 1.57
SNX1-214ENST00000625244 WDR7Q9Y4E6 1490 aa24.83■■□□□ 1.57
SNX1-214ENST00000625244 CD109Q6YHK3 1445 aa24.8■■□□□ 1.56
SNX1-214ENST00000625244 KIF21BO75037 1637 aa24.8■■□□□ 1.56
SNX1-214ENST00000625244 MAGI3Q5TCQ9 1506 aa24.8■■□□□ 1.56
SNX1-214ENST00000625244 LMTK3Q96Q04 1460 aa24.78■■□□□ 1.56
SNX1-214ENST00000625244 KCNH8Q96L42 1107 aa24.75■■□□□ 1.55
SNX1-214ENST00000625244 PTPRMP28827 1452 aa24.75■■□□□ 1.55
SNX1-214ENST00000625244 UGGT2Q9NYU1 1516 aa24.71■■□□□ 1.55
SNX1-214ENST00000625244 CFAP43Q8NDM7 1665 aa24.69■■□□□ 1.54
SNX1-214ENST00000625244 KIAA0556O60303 1618 aa24.68■■□□□ 1.54
SNX1-214ENST00000625244 ADAMTSL3P82987 1691 aa24.66■■□□□ 1.54
SNX1-214ENST00000625244 PCF11O94913 1555 aaKnown RBP24.63■■□□□ 1.53
SNX1-214ENST00000625244 ARAP3Q8WWN8 1544 aa24.63■■□□□ 1.53
SNX1-214ENST00000625244 ILDR2Q71H61 639 aa24.59■■□□□ 1.53
SNX1-214ENST00000625244 RAPGEF2Q9Y4G8 1499 aa24.55■■□□□ 1.52
SNX1-214ENST00000625244 SOCS7O14512 581 aa24.54■■□□□ 1.52
SNX1-214ENST00000625244 ABCA8O94911 1581 aa24.54■■□□□ 1.52
SNX1-214ENST00000625244 RAPGEF3O95398 923 aa24.53■■□□□ 1.52
SNX1-214ENST00000625244 HSPA2P54652 639 aa24.52■■□□□ 1.52
SNX1-214ENST00000625244 CERKQ8TCT0 537 aa24.52■■□□□ 1.52
SNX1-214ENST00000625244 MADDQ8WXG6 1647 aa24.52■■□□□ 1.52
SNX1-214ENST00000625244 ARID4BQ4LE39 1312 aaPredicted RBP24.5■■□□□ 1.51
SNX1-214ENST00000625244 BCORL1Q5H9F3 1711 aa24.49■■□□□ 1.51
SNX1-214ENST00000625244 DISP3Q9P2K9 1392 aa24.49■■□□□ 1.51
SNX1-214ENST00000625244 PHLDB1Q86UU1 1377 aa24.46■■□□□ 1.51
SNX1-214ENST00000625244 ARID3CA6NKF2 412 aa24.45■■□□□ 1.5
SNX1-214ENST00000625244 GOLGA3Q08378 1498 aa24.41■■□□□ 1.5
SNX1-214ENST00000625244 PLPPR3Q6T4P5 718 aa24.39■■□□□ 1.49
SNX1-214ENST00000625244 RIMS1Q86UR5 1692 aaKnown RBP24.38■■□□□ 1.49
SNX1-214ENST00000625244 FRMPD1Q5SYB0 1578 aa24.37■■□□□ 1.49
SNX1-214ENST00000625244 ABCA9Q8IUA7 1624 aa24.37■■□□□ 1.49
SNX1-214ENST00000625244 ATP10BO94823 1461 aa24.37■■□□□ 1.49
SNX1-214ENST00000625244 NEO1Q92859 1461 aa24.36■■□□□ 1.49
SNX1-214ENST00000625244 CTTNBP2Q8WZ74 1663 aa24.3■■□□□ 1.48
SNX1-214ENST00000625244 ARHGEF40Q8TER5 1519 aa24.27■■□□□ 1.48
SNX1-214ENST00000625244 P3H3Q8IVL6 736 aa24.24■■□□□ 1.47
SNX1-214ENST00000625244 DENND4BO75064 1496 aaPredicted RBP24.2■■□□□ 1.47
SNX1-214ENST00000625244 POGZQ7Z3K3 1410 aa24.2■■□□□ 1.46
SNX1-214ENST00000625244 FAM9AQ8IZU1 332 aaPredicted RBP24.19■■□□□ 1.46
SNX1-214ENST00000625244 SPATA31D1Q6ZQQ2 1576 aa24.19■■□□□ 1.46
SNX1-214ENST00000625244 FANCAO15360 1455 aa24.18■■□□□ 1.46
SNX1-214ENST00000625244 MLECQ14165 292 aa24.17■■□□□ 1.46
SNX1-214ENST00000625244 SIGLEC1Q9BZZ2 1709 aa24.17■■□□□ 1.46
SNX1-214ENST00000625244 FHOD3Q2V2M9 1422 aa24.17■■□□□ 1.46
SNX1-214ENST00000625244 AKNAQ7Z591 1439 aa24.17■■□□□ 1.46
SNX1-214ENST00000625244 RICTORQ6R327 1708 aa24.16■■□□□ 1.46
SNX1-214ENST00000625244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.16■■□□□ 1.46
SNX1-214ENST00000625244 HNRNPUL2Q1KMD3 747 aaKnown RBP24.16■■□□□ 1.46
SNX1-214ENST00000625244 YEATS2Q9ULM3 1422 aa24.14■■□□□ 1.45
SNX1-214ENST00000625244 TTC37Q6PGP7 1564 aa24.1■■□□□ 1.45
SNX1-214ENST00000625244 PRXQ9BXM0 1461 aa24.09■■□□□ 1.45
SNX1-214ENST00000625244 ZFYVE16Q7Z3T8 1539 aa24.09■■□□□ 1.45
SNX1-214ENST00000625244 DMRT2Q9Y5R5 561 aa24.08■■□□□ 1.45
SNX1-214ENST00000625244 ZMYM4Q5VZL5 1548 aa24.08■■□□□ 1.45
SNX1-214ENST00000625244 FER1L4A9Z1Z3 1794 aa24.07■■□□□ 1.44
SNX1-214ENST00000625244 RAPGEF6Q8TEU7 1601 aa24.06■■□□□ 1.44
SNX1-214ENST00000625244 CEBPAP49715 358 aaPredicted RBP24.06■■□□□ 1.44
SNX1-214ENST00000625244 STRCQ7RTU9 1775 aa24.05■■□□□ 1.44
SNX1-214ENST00000625244 EFCAB5A4FU69 1503 aa24.05■■□□□ 1.44
SNX1-214ENST00000625244 NUP153P49790 1475 aaKnown RBP24.03■■□□□ 1.44
SNX1-214ENST00000625244 PREX1Q8TCU6 1659 aa24.02■■□□□ 1.44
SNX1-214ENST00000625244 MAGI2Q86UL8 1455 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms