RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 NUP160Q12769 1436 aa9.73□□□□□ -0.85
CPNE3-208ENST00000614678 CARMIL1Q5VZK9 1371 aa9.72□□□□□ -0.85
CPNE3-208ENST00000614678 JPH4Q96JJ6 628 aa9.69□□□□□ -0.86
CPNE3-208ENST00000614678 RANGAP1P46060 587 aaPredicted RBP9.67□□□□□ -0.86
CPNE3-208ENST00000614678 PRG4Q92954 1404 aaPredicted RBP9.67□□□□□ -0.86
CPNE3-208ENST00000614678 SHROOM2Q13796 1616 aa9.65□□□□□ -0.86
CPNE3-208ENST00000614678 CUL7Q14999 1698 aa9.65□□□□□ -0.87
CPNE3-208ENST00000614678 RAPGEF2Q9Y4G8 1499 aa9.63□□□□□ -0.87
CPNE3-208ENST00000614678 TRHP20396 242 aaPredicted RBP9.62□□□□□ -0.87
CPNE3-208ENST00000614678 P3H3Q8IVL6 736 aa9.61□□□□□ -0.87
CPNE3-208ENST00000614678 CSRNP3Q8WYN3 585 aa9.61□□□□□ -0.87
CPNE3-208ENST00000614678 KIAA0586Q9BVV6 1533 aa9.61□□□□□ -0.87
CPNE3-208ENST00000614678 PRXQ9BXM0 1461 aa9.6□□□□□ -0.87
CPNE3-208ENST00000614678 ARID3CA6NKF2 412 aa9.58□□□□□ -0.88
CPNE3-208ENST00000614678 DISP1Q96F81 1524 aa9.57□□□□□ -0.88
CPNE3-208ENST00000614678 IQGAP2Q13576 1575 aa9.57□□□□□ -0.88
CPNE3-208ENST00000614678 ADCY10Q96PN6 1610 aa9.54□□□□□ -0.88
CPNE3-208ENST00000614678 CTTNBP2Q8WZ74 1663 aa9.52□□□□□ -0.89
CPNE3-208ENST00000614678 PTPRGP23470 1445 aa9.52□□□□□ -0.89
CPNE3-208ENST00000614678 PLB1Q6P1J6 1458 aa9.51□□□□□ -0.89
CPNE3-208ENST00000614678 KIAA0556O60303 1618 aa9.5□□□□□ -0.89
CPNE3-208ENST00000614678 UGGT2Q9NYU1 1516 aa9.49□□□□□ -0.89
CPNE3-208ENST00000614678 UBTFP17480 764 aaKnown RBP9.49□□□□□ -0.89
CPNE3-208ENST00000614678 TNIKQ9UKE5 1360 aa9.49□□□□□ -0.89
CPNE3-208ENST00000614678 LOC105371045A0A1W2PR82 267 aa9.47□□□□□ -0.89
CPNE3-208ENST00000614678 FHOD3Q2V2M9 1422 aa9.47□□□□□ -0.89
CPNE3-208ENST00000614678 CARMIL2Q6F5E8 1435 aa9.46□□□□□ -0.89
CPNE3-208ENST00000614678 KIF13AQ9H1H9 1805 aa9.46□□□□□ -0.9
CPNE3-208ENST00000614678 FAM69CQ0P6D2 419 aa9.45□□□□□ -0.9
CPNE3-208ENST00000614678 ABCC2Q92887 1545 aa9.45□□□□□ -0.9
CPNE3-208ENST00000614678 EEA1Q15075 1411 aa9.44□□□□□ -0.9
CPNE3-208ENST00000614678 UACAQ9BZF9 1416 aa9.44□□□□□ -0.9
CPNE3-208ENST00000614678 KIF21BO75037 1637 aa9.44□□□□□ -0.9
CPNE3-208ENST00000614678 TSPOAP1O95153 1857 aa9.43□□□□□ -0.9
CPNE3-208ENST00000614678 NPM1P06748 294 aaKnown RBP eCLIP9.42□□□□□ -0.9
CPNE3-208ENST00000614678 ASXL2Q76L83 1435 aa9.41□□□□□ -0.9
CPNE3-208ENST00000614678 KCNH8Q96L42 1107 aa9.41□□□□□ -0.9
CPNE3-208ENST00000614678 SAMD9Q5K651 1589 aa9.41□□□□□ -0.9
CPNE3-208ENST00000614678 ZCCHC11Q5TAX3 1644 aaKnown RBP9.4□□□□□ -0.9
CPNE3-208ENST00000614678 GOLGA3Q08378 1498 aa9.4□□□□□ -0.91
CPNE3-208ENST00000614678 DIP2BQ9P265 1576 aa9.4□□□□□ -0.91
CPNE3-208ENST00000614678 ABCA8O94911 1581 aa9.39□□□□□ -0.91
CPNE3-208ENST00000614678 ABCC10Q5T3U5 1492 aa9.39□□□□□ -0.91
CPNE3-208ENST00000614678 ARHGAP35Q9NRY4 1499 aa9.39□□□□□ -0.91
CPNE3-208ENST00000614678 ATP1B4Q9UN42 357 aaPredicted RBP9.38□□□□□ -0.91
CPNE3-208ENST00000614678 MAPKBP1O60336 1514 aa9.38□□□□□ -0.91
CPNE3-208ENST00000614678 KDM5BQ9UGL1 1544 aa9.38□□□□□ -0.91
CPNE3-208ENST00000614678 ATP10BO94823 1461 aa9.37□□□□□ -0.91
CPNE3-208ENST00000614678 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.36□□□□□ -0.91
CPNE3-208ENST00000614678 HNRNPUL2Q1KMD3 747 aaKnown RBP9.36□□□□□ -0.91
CPNE3-208ENST00000614678 UHRF1BP1LA0JNW5 1464 aa9.36□□□□□ -0.91
CPNE3-208ENST00000614678 NUP153P49790 1475 aaKnown RBP9.35□□□□□ -0.91
CPNE3-208ENST00000614678 CDK13Q14004 1512 aaKnown RBP9.35□□□□□ -0.91
CPNE3-208ENST00000614678 COL17A1Q9UMD9 1497 aaPredicted RBP9.33□□□□□ -0.92
CPNE3-208ENST00000614678 PPRC1Q5VV67 1664 aaKnown RBP9.33□□□□□ -0.92
CPNE3-208ENST00000614678 EPRSP07814 1512 aaKnown RBP9.33□□□□□ -0.92
CPNE3-208ENST00000614678 RAPGEF6Q8TEU7 1601 aa9.33□□□□□ -0.92
CPNE3-208ENST00000614678 LRRIQ1Q96JM4 1722 aa9.32□□□□□ -0.92
CPNE3-208ENST00000614678 WDR7Q9Y4E6 1490 aa9.31□□□□□ -0.92
CPNE3-208ENST00000614678 CLIP1P30622 1438 aa9.28□□□□□ -0.92
CPNE3-208ENST00000614678 EFCAB5A4FU69 1503 aa9.27□□□□□ -0.92
CPNE3-208ENST00000614678 MAP3K4Q9Y6R4 1608 aa9.27□□□□□ -0.93
CPNE3-208ENST00000614678 PCF11O94913 1555 aaKnown RBP9.27□□□□□ -0.93
CPNE3-208ENST00000614678 CEP162Q5TB80 1403 aa9.26□□□□□ -0.93
CPNE3-208ENST00000614678 MAGI3Q5TCQ9 1506 aa9.25□□□□□ -0.93
CPNE3-208ENST00000614678 CD109Q6YHK3 1445 aa9.25□□□□□ -0.93
CPNE3-208ENST00000614678 GLI2P10070 1586 aa9.24□□□□□ -0.93
CPNE3-208ENST00000614678 RAPGEF3O95398 923 aa9.24□□□□□ -0.93
CPNE3-208ENST00000614678 KDM6BO15054 1643 aa9.24□□□□□ -0.93
CPNE3-208ENST00000614678 TTC37Q6PGP7 1564 aa9.24□□□□□ -0.93
CPNE3-208ENST00000614678 KIF14Q15058 1648 aa9.24□□□□□ -0.93
CPNE3-208ENST00000614678 PLEKHD1A6NEE1 506 aa9.23□□□□□ -0.93
CPNE3-208ENST00000614678 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.22□□□□□ -0.93
CPNE3-208ENST00000614678 FMN1Q68DA7 1419 aa9.22□□□□□ -0.93
CPNE3-208ENST00000614678 HECW1Q76N89 1606 aa9.19□□□□□ -0.94
CPNE3-208ENST00000614678 ABCA9Q8IUA7 1624 aa9.19□□□□□ -0.94
CPNE3-208ENST00000614678 CASKIN1Q8WXD9 1431 aa9.19□□□□□ -0.94
CPNE3-208ENST00000614678 CFAP43Q8NDM7 1665 aa9.18□□□□□ -0.94
CPNE3-208ENST00000614678 KDM4FA0A1W2PPD8 638 aa9.18□□□□□ -0.94
CPNE3-208ENST00000614678 KANK4Q5T7N3 995 aaPredicted RBP9.16□□□□□ -0.94
CPNE3-208ENST00000614678 PPARGC1BQ86YN6 1023 aaKnown RBP9.16□□□□□ -0.94
CPNE3-208ENST00000614678 TROQ12816 1431 aaPredicted RBP9.14□□□□□ -0.95
CPNE3-208ENST00000614678 FRMPD1Q5SYB0 1578 aa9.14□□□□□ -0.95
CPNE3-208ENST00000614678 ZNF644Q9H582 1327 aaPredicted RBP9.14□□□□□ -0.95
CPNE3-208ENST00000614678 FANCAO15360 1455 aa9.14□□□□□ -0.95
CPNE3-208ENST00000614678 FYCO1Q9BQS8 1478 aa9.14□□□□□ -0.95
CPNE3-208ENST00000614678 TEX14Q8IWB6 1497 aa9.14□□□□□ -0.95
CPNE3-208ENST00000614678 AFAP1Q8N556 730 aa9.13□□□□□ -0.95
CPNE3-208ENST00000614678 ZNF777Q9ULD5 760 aaPredicted RBP9.13□□□□□ -0.95
CPNE3-208ENST00000614678 SIGLEC1Q9BZZ2 1709 aa9.13□□□□□ -0.95
CPNE3-208ENST00000614678 AKNAQ7Z591 1439 aa9.12□□□□□ -0.95
CPNE3-208ENST00000614678 CDC42BPBQ9Y5S2 1711 aa9.12□□□□□ -0.95
CPNE3-208ENST00000614678 ARHGEF12Q9NZN5 1544 aa9.12□□□□□ -0.95
CPNE3-208ENST00000614678 YEATS2Q9ULM3 1422 aa9.11□□□□□ -0.95
CPNE3-208ENST00000614678 PLCH2O75038 1416 aa9.11□□□□□ -0.95
CPNE3-208ENST00000614678 SCAPERQ9BY12 1400 aa9.1□□□□□ -0.95
CPNE3-208ENST00000614678 CDC42BPAQ5VT25 1732 aa9.1□□□□□ -0.95
CPNE3-208ENST00000614678 HNRNPMP52272 730 aaKnown RBP eCLIP9.1□□□□□ -0.95
CPNE3-208ENST00000614678 CDK11AQ9UQ88 783 aaPredicted RBP9.1□□□□□ -0.95
CPNE3-208ENST00000614678 VPS8Q8N3P4 1428 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms