RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 A0A0U1RQG5 324 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-213ENST00000613099 ZCCHC6Q5VYS8 1495 aaKnown RBP6.56□□□□□ -1.36
VPS13D-213ENST00000613099 ARID4BQ4LE39 1312 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-213ENST00000613099 SCRIBQ14160 1630 aa6.54□□□□□ -1.36
VPS13D-213ENST00000613099 TNNT3P45378 269 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-213ENST00000613099 DNTTIP2Q5QJE6 756 aaKnown RBP6.54□□□□□ -1.36
VPS13D-213ENST00000613099 LAS1LQ9Y4W2 734 aaKnown RBP6.54□□□□□ -1.36
VPS13D-213ENST00000613099 RRP9O43818 475 aaKnown RBP6.54□□□□□ -1.36
VPS13D-213ENST00000613099 PRDM2Q13029 1718 aa6.53□□□□□ -1.36
VPS13D-213ENST00000613099 AEBP2Q6ZN18 517 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-213ENST00000613099 MAP7D2Q96T17 732 aa6.52□□□□□ -1.37
VPS13D-213ENST00000613099 SALL2Q9Y467 1007 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-213ENST00000613099 CANXP27824 592 aaKnown RBP6.52□□□□□ -1.37
VPS13D-213ENST00000613099 IPO9Q96P70 1041 aaKnown RBP6.52□□□□□ -1.37
VPS13D-213ENST00000613099 APPP05067 770 aa6.51□□□□□ -1.37
VPS13D-213ENST00000613099 MTERF4Q7Z6M4 381 aaKnown RBP6.51□□□□□ -1.37
VPS13D-213ENST00000613099 CALRP27797 417 aaKnown RBP6.5□□□□□ -1.37
VPS13D-213ENST00000613099 ABCC8Q09428 1581 aa6.5□□□□□ -1.37
VPS13D-213ENST00000613099 HNRNPUQ00839 825 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS13D-213ENST00000613099 GOLGA6L22H0YM25 854 aa6.49□□□□□ -1.37
VPS13D-213ENST00000613099 TAF3Q5VWG9 929 aa6.49□□□□□ -1.37
VPS13D-213ENST00000613099 UNC13AQ9UPW8 1703 aa6.49□□□□□ -1.37
VPS13D-213ENST00000613099 CEP162Q5TB80 1403 aa6.48□□□□□ -1.37
VPS13D-213ENST00000613099 ATP1B4Q9UN42 357 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-213ENST00000613099 HMGB2P26583 209 aaKnown RBP6.48□□□□□ -1.37
VPS13D-213ENST00000613099 TAF7LQ5H9L4 462 aa6.48□□□□□ -1.37
VPS13D-213ENST00000613099 CHAF1AQ13111 956 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-213ENST00000613099 GSE1Q14687 1217 aa6.46□□□□□ -1.38
VPS13D-213ENST00000613099 PDIA4P13667 645 aaKnown RBP6.46□□□□□ -1.38
VPS13D-213ENST00000613099 GOLGA6L3A6NEY3 463 aa6.46□□□□□ -1.38
VPS13D-213ENST00000613099 ZMYND15Q9H091 742 aa6.46□□□□□ -1.38
VPS13D-213ENST00000613099 PTMAP06454 111 aaKnown RBP6.45□□□□□ -1.38
VPS13D-213ENST00000613099 MSNP26038 577 aaKnown RBP6.45□□□□□ -1.38
VPS13D-213ENST00000613099 TIMELESSQ9UNS1 1208 aa6.45□□□□□ -1.38
VPS13D-213ENST00000613099 ARXQ96QS3 562 aa6.44□□□□□ -1.38
VPS13D-213ENST00000613099 TPM2P07951 284 aa6.44□□□□□ -1.38
VPS13D-213ENST00000613099 FAM43AQ8N2R8 423 aa6.44□□□□□ -1.38
VPS13D-213ENST00000613099 TRIM52Q96A61 297 aa6.43□□□□□ -1.38
VPS13D-213ENST00000613099 HOMEZQ8IX15 550 aa6.42□□□□□ -1.38
VPS13D-213ENST00000613099 BAZ1AQ9NRL2 1556 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-213ENST00000613099 HMGB1P09429 215 aaKnown RBP6.41□□□□□ -1.38
VPS13D-213ENST00000613099 IRX6P78412 446 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-213ENST00000613099 DDX10Q13206 875 aaKnown RBP6.41□□□□□ -1.38
VPS13D-213ENST00000613099 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-213ENST00000613099 TCERG1O14776 1098 aaKnown RBP6.4□□□□□ -1.38
VPS13D-213ENST00000613099 SMARCA2P51531 1590 aa6.4□□□□□ -1.38
VPS13D-213ENST00000613099 AMER1Q5JTC6 1135 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-213ENST00000613099 GOLGA6L6A8MZA4 724 aa6.4□□□□□ -1.39
VPS13D-213ENST00000613099 CCER2I3L3R5 266 aa6.39□□□□□ -1.39
VPS13D-213ENST00000613099 KIAA2012Q0VF49 1180 aa6.38□□□□□ -1.39
VPS13D-213ENST00000613099 STAC3Q96MF2 364 aa6.38□□□□□ -1.39
VPS13D-213ENST00000613099 PLEKHG5O94827 1062 aa6.37□□□□□ -1.39
VPS13D-213ENST00000613099 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-213ENST00000613099 CSPP1Q1MSJ5 1256 aa6.37□□□□□ -1.39
VPS13D-213ENST00000613099 MYH16Q9H6N6 1097 aa6.37□□□□□ -1.39
VPS13D-213ENST00000613099 CHMP4AQ9BY43 222 aa6.36□□□□□ -1.39
VPS13D-213ENST00000613099 GOLGA6L1Q8N7Z2 621 aa6.35□□□□□ -1.39
VPS13D-213ENST00000613099 PLPPR3Q6T4P5 718 aa6.35□□□□□ -1.39
VPS13D-213ENST00000613099 NCBP3Q53F19 620 aaKnown RBP6.35□□□□□ -1.39
VPS13D-213ENST00000613099 IL27Q8NEV9 243 aa6.35□□□□□ -1.39
VPS13D-213ENST00000613099 RBM10P98175 930 aaKnown RBP6.35□□□□□ -1.39
VPS13D-213ENST00000613099 FAM13BQ9NYF5 915 aa6.34□□□□□ -1.39
VPS13D-213ENST00000613099 ZNF771Q7L3S4 317 aaPredicted RBP6.34□□□□□ -1.39
VPS13D-213ENST00000613099 B4GALNT3Q6L9W6 998 aa6.34□□□□□ -1.39
VPS13D-213ENST00000613099 PDCL3Q9H2J4 239 aa6.34□□□□□ -1.39
VPS13D-213ENST00000613099 ERCC6Q03468 1493 aa6.34□□□□□ -1.39
VPS13D-213ENST00000613099 CCDC66A2RUB6 948 aa6.34□□□□□ -1.4
VPS13D-213ENST00000613099 HSP90B1P14625 803 aaKnown RBP6.34□□□□□ -1.4
VPS13D-213ENST00000613099 TSPYL1Q9H0U9 437 aa6.33□□□□□ -1.4
VPS13D-213ENST00000613099 SETQ01105 290 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-213ENST00000613099 GBP4Q96PP9 640 aa6.33□□□□□ -1.4
VPS13D-213ENST00000613099 NOM1Q5C9Z4 860 aaKnown RBP6.32□□□□□ -1.4
VPS13D-213ENST00000613099 BBXQ8WY36 941 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-213ENST00000613099 FAM9BQ8IZU0 186 aa6.32□□□□□ -1.4
VPS13D-213ENST00000613099 MRS2Q9HD23 443 aa6.32□□□□□ -1.4
VPS13D-213ENST00000613099 SKOR2Q2VWA4 1001 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-213ENST00000613099 BRPF3Q9ULD4 1205 aa6.31□□□□□ -1.4
VPS13D-213ENST00000613099 NRDCO43847 1150 aa6.31□□□□□ -1.4
VPS13D-213ENST00000613099 HMGB3O15347 200 aaKnown RBP6.3□□□□□ -1.4
VPS13D-213ENST00000613099 MS4A1P11836 297 aa6.3□□□□□ -1.4
VPS13D-213ENST00000613099 C14orf37Q86TY3 774 aa6.3□□□□□ -1.4
VPS13D-213ENST00000613099 PATL2C9JE40 543 aaKnown RBP6.3□□□□□ -1.4
VPS13D-213ENST00000613099 AXDND1Q5T1B0 1012 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-213ENST00000613099 FGD1P98174 961 aa6.29□□□□□ -1.4
VPS13D-213ENST00000613099 TMC1Q8TDI8 760 aa6.29□□□□□ -1.4
VPS13D-213ENST00000613099 GPS2Q13227 327 aa6.29□□□□□ -1.4
VPS13D-213ENST00000613099 TEX35Q5T0J7 233 aa6.29□□□□□ -1.4
VPS13D-213ENST00000613099 DDX11L8A8MPP1 907 aa6.28□□□□□ -1.4
VPS13D-213ENST00000613099 BRD2P25440 801 aaKnown RBP6.28□□□□□ -1.4
VPS13D-213ENST00000613099 CFAP44Q96MT7 982 aa6.28□□□□□ -1.4
VPS13D-213ENST00000613099 WDR97A6NE52 1622 aa6.28□□□□□ -1.4
VPS13D-213ENST00000613099 HAP1P54257 671 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-213ENST00000613099 CWC15Q9P013 229 aaKnown RBP6.28□□□□□ -1.4
VPS13D-213ENST00000613099 CLGNO14967 610 aa6.27□□□□□ -1.4
VPS13D-213ENST00000613099 NAP1L2Q9ULW6 460 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-213ENST00000613099 IRX3P78415 501 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-213ENST00000613099 RSF1Q96T23 1441 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-213ENST00000613099 FHAD1B1AJZ9 1412 aa6.27□□□□□ -1.41
VPS13D-213ENST00000613099 ISY1Q9ULR0 285 aaKnown RBP6.27□□□□□ -1.41
VPS13D-213ENST00000613099 C11orf95C9JLR9 678 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms