RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 ANP32EQ9BTT0 268 aa15.42■□□□□ 0.06
FAM3A-221ENST00000612856 CADPSQ9ULU8 1353 aa15.42■□□□□ 0.06
FAM3A-221ENST00000612856 PEG3Q9GZU2 1588 aa15.42■□□□□ 0.06
FAM3A-221ENST00000612856 ESF1Q9H501 851 aaKnown RBP15.41■□□□□ 0.06
FAM3A-221ENST00000612856 KANK4Q5T7N3 995 aaPredicted RBP15.41■□□□□ 0.06
FAM3A-221ENST00000612856 RRP7BPQ9NSQ0 103 aa15.4■□□□□ 0.06
FAM3A-221ENST00000612856 PLEKHG5O94827 1062 aa15.38■□□□□ 0.05
FAM3A-221ENST00000612856 NESP48681 1621 aa15.38■□□□□ 0.05
FAM3A-221ENST00000612856 MTUS2Q5JR59 1369 aa15.37■□□□□ 0.05
FAM3A-221ENST00000612856 CC2D2AQ9P2K1 1620 aa15.35■□□□□ 0.05
FAM3A-221ENST00000612856 PLEKHD1A6NEE1 506 aa15.34■□□□□ 0.05
FAM3A-221ENST00000612856 STAG3Q9UJ98 1225 aa15.33■□□□□ 0.04
FAM3A-221ENST00000612856 CUX1P39880 1505 aa15.33■□□□□ 0.04
FAM3A-221ENST00000612856 CYB5RLQ6IPT4 315 aa15.32■□□□□ 0.04
FAM3A-221ENST00000612856 CARMIL1Q5VZK9 1371 aa15.31■□□□□ 0.04
FAM3A-221ENST00000612856 CFTRP13569 1480 aa15.31■□□□□ 0.04
FAM3A-221ENST00000612856 HIRIP3Q9BW71 556 aaPredicted RBP15.31■□□□□ 0.04
FAM3A-221ENST00000612856 VPS8Q8N3P4 1428 aa15.31■□□□□ 0.04
FAM3A-221ENST00000612856 MLECQ14165 292 aa15.3■□□□□ 0.04
FAM3A-221ENST00000612856 ARID4BQ4LE39 1312 aaPredicted RBP15.3■□□□□ 0.04
FAM3A-221ENST00000612856 PDS5BQ9NTI5 1447 aa15.3■□□□□ 0.04
FAM3A-221ENST00000612856 TSPY4P0CV99 314 aa15.3■□□□□ 0.04
FAM3A-221ENST00000612856 TSPY10P0CW01 314 aa15.3■□□□□ 0.04
FAM3A-221ENST00000612856 KDM2AQ9Y2K7 1162 aa15.29■□□□□ 0.04
FAM3A-221ENST00000612856 RAD54L2Q9Y4B4 1467 aa15.29■□□□□ 0.04
FAM3A-221ENST00000612856 FANCD2Q9BXW9 1451 aa15.28■□□□□ 0.04
FAM3A-221ENST00000612856 NEFLP07196 543 aa15.28■□□□□ 0.04
FAM3A-221ENST00000612856 HMGXB3Q12766 1538 aa15.28■□□□□ 0.04
FAM3A-221ENST00000612856 FGD5Q6ZNL6 1462 aa15.26■□□□□ 0.03
FAM3A-221ENST00000612856 TOP2BQ02880 1626 aa15.25■□□□□ 0.03
FAM3A-221ENST00000612856 IGF1RP08069 1367 aa15.24■□□□□ 0.03
FAM3A-221ENST00000612856 RGL3Q3MIN7 710 aa15.23■□□□□ 0.03
FAM3A-221ENST00000612856 CFDP1Q9UEE9 299 aaPredicted RBP15.23■□□□□ 0.03
FAM3A-221ENST00000612856 SUPT16HQ9Y5B9 1047 aaKnown RBP15.21■□□□□ 0.02
FAM3A-221ENST00000612856 KIF21BO75037 1637 aa15.18■□□□□ 0.02
FAM3A-221ENST00000612856 TSHZ2Q9NRE2 1034 aa15.17■□□□□ 0.02
FAM3A-221ENST00000612856 ARAP1Q96P48 1450 aa15.15■□□□□ 0.02
FAM3A-221ENST00000612856 FKBP8Q14318 412 aa15.15■□□□□ 0.02
FAM3A-221ENST00000612856 PRXQ9BXM0 1461 aa15.14■□□□□ 0.01
FAM3A-221ENST00000612856 JPH4Q96JJ6 628 aa15.14■□□□□ 0.01
FAM3A-221ENST00000612856 FHOD3Q2V2M9 1422 aa15.13■□□□□ 0.01
FAM3A-221ENST00000612856 SLC24A1O60721 1099 aa15.13■□□□□ 0.01
FAM3A-221ENST00000612856 SENP3-EIF4A1A0A087X0R7 540 aa15.12■□□□□ 0.01
FAM3A-221ENST00000612856 AQRO60306 1485 aaKnown RBP eCLIP15.07■□□□□ 09e-7■■■■□ 24.3
FAM3A-221ENST00000612856 GGT6Q6P531 493 aa15.07■□□□□ 0
FAM3A-221ENST00000612856 ARHGAP35Q9NRY4 1499 aa15.06■□□□□ 0
FAM3A-221ENST00000612856 POLA1P09884 1462 aaPredicted RBP15.05■□□□□ 0
FAM3A-221ENST00000612856 BIVM-ERCC5R4GMW8 1640 aa15.04■□□□□ -0
FAM3A-221ENST00000612856 OSCARQ8IYS5 282 aa15.04■□□□□ -0
FAM3A-221ENST00000612856 TOPBP1Q92547 1522 aa15.04■□□□□ -0
FAM3A-221ENST00000612856 FOXD1Q16676 465 aa15.04■□□□□ -0
FAM3A-221ENST00000612856 CCNB3Q8WWL7 1395 aa15.03■□□□□ -0
FAM3A-221ENST00000612856 PRKCSHP14314 528 aaPredicted RBP15.03■□□□□ -0
FAM3A-221ENST00000612856 SIN3AQ96ST3 1273 aa15.02□□□□□ -0.01
FAM3A-221ENST00000612856 SALL2Q9Y467 1007 aaPredicted RBP15.01□□□□□ -0.01
FAM3A-221ENST00000612856 TONSLQ96HA7 1378 aa15□□□□□ -0.01
FAM3A-221ENST00000612856 DDX10Q13206 875 aaKnown RBP14.99□□□□□ -0.01
FAM3A-221ENST00000612856 ERICH3Q5RHP9 1530 aa14.99□□□□□ -0.01
FAM3A-221ENST00000612856 PPP1R15AO75807 674 aaPredicted RBP14.98□□□□□ -0.01
FAM3A-221ENST00000612856 C14orf37Q86TY3 774 aa14.96□□□□□ -0.01
FAM3A-221ENST00000612856 HNRNPMP52272 730 aaKnown RBP eCLIP14.95□□□□□ -0.02
FAM3A-221ENST00000612856 URB2Q14146 1524 aaKnown RBP14.95□□□□□ -0.02
FAM3A-221ENST00000612856 GAPVD1Q14C86 1478 aa14.94□□□□□ -0.02
FAM3A-221ENST00000612856 NBR1Q14596 966 aa14.94□□□□□ -0.02
FAM3A-221ENST00000612856 ZBTB7CA1YPR0 619 aa14.93□□□□□ -0.02
FAM3A-221ENST00000612856 RBM19Q9Y4C8 960 aaKnown RBP14.93□□□□□ -0.02
FAM3A-221ENST00000612856 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
FAM3A-221ENST00000612856 PHLDB1Q86UU1 1377 aa14.92□□□□□ -0.02
FAM3A-221ENST00000612856 SAFB2Q14151 953 aaKnown RBP eCLIP14.91□□□□□ -0.02
FAM3A-221ENST00000612856 NUTM2DQ5VT03 806 aaPredicted RBP14.91□□□□□ -0.02
FAM3A-221ENST00000612856 RAB3GAP2Q9H2M9 1393 aa14.9□□□□□ -0.02
FAM3A-221ENST00000612856 DNMBPQ6XZF7 1577 aa14.9□□□□□ -0.02
FAM3A-221ENST00000612856 A0A0G2JS52 829 aa14.9□□□□□ -0.02
FAM3A-221ENST00000612856 IRX6P78412 446 aaPredicted RBP14.89□□□□□ -0.03
FAM3A-221ENST00000612856 CLSPNQ9HAW4 1339 aa14.89□□□□□ -0.03
FAM3A-221ENST00000612856 DHX57Q6P158 1386 aaKnown RBP14.88□□□□□ -0.03
FAM3A-221ENST00000612856 ANP32CO43423 234 aa14.87□□□□□ -0.03
FAM3A-221ENST00000612856 CARMIL2Q6F5E8 1435 aa14.86□□□□□ -0.03
FAM3A-221ENST00000612856 RTN4Q9NQC3 1192 aaKnown RBP14.86□□□□□ -0.03
FAM3A-221ENST00000612856 TMC1Q8TDI8 760 aa14.85□□□□□ -0.03
FAM3A-221ENST00000612856 LMOD2Q6P5Q4 547 aa14.84□□□□□ -0.03
FAM3A-221ENST00000612856 ABCA10Q8WWZ4 1543 aa14.84□□□□□ -0.03
FAM3A-221ENST00000612856 RTL5Q5HYW3 569 aaPredicted RBP14.83□□□□□ -0.04
FAM3A-221ENST00000612856 KIF3BO15066 747 aa14.83□□□□□ -0.04
FAM3A-221ENST00000612856 FAM69CQ0P6D2 419 aa14.83□□□□□ -0.04
FAM3A-221ENST00000612856 EIF5BO60841 1220 aaKnown RBP14.82□□□□□ -0.04
FAM3A-221ENST00000612856 LRRC9Q6ZRR7 1453 aa14.81□□□□□ -0.04
FAM3A-221ENST00000612856 PTPRGP23470 1445 aa14.8□□□□□ -0.04
FAM3A-221ENST00000612856 FAM9BQ8IZU0 186 aa14.8□□□□□ -0.04
FAM3A-221ENST00000612856 ZNF644Q9H582 1327 aaPredicted RBP14.8□□□□□ -0.04
FAM3A-221ENST00000612856 CCDC136Q96JN2 1154 aa14.79□□□□□ -0.04
FAM3A-221ENST00000612856 LAMC3Q9Y6N6 1575 aa14.79□□□□□ -0.04
FAM3A-221ENST00000612856 FMN1Q68DA7 1419 aa14.79□□□□□ -0.04
FAM3A-221ENST00000612856 SOX12O15370 315 aa14.79□□□□□ -0.04
FAM3A-221ENST00000612856 EFCAB2Q5VUJ9 269 aa14.79□□□□□ -0.04
FAM3A-221ENST00000612856 SETD5Q9C0A6 1442 aa14.79□□□□□ -0.04
FAM3A-221ENST00000612856 ZNF608Q9ULD9 1512 aaPredicted RBP14.78□□□□□ -0.04
FAM3A-221ENST00000612856 DEKP35659 375 aaKnown RBP14.78□□□□□ -0.04
FAM3A-221ENST00000612856 STK26Q9P289 416 aa14.78□□□□□ -0.04
FAM3A-221ENST00000612856 DCAF11Q8TEB1 546 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 165.1 ms